Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_9 and HP15_10 are separated by 124 nucleotides HP15_10 and HP15_11 are separated by 62 nucleotides
HP15_9: HP15_9 - BNR/Asp-box repeat protein, at 10,091 to 11,251
_9
HP15_10: HP15_10 - transporter, at 11,376 to 13,913
_10
HP15_11: HP15_11 - conserved hypothetical protein, at 13,976 to 14,941
_11
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 10.389 kb on + strand, within HP15_9 at 10.390 kb on + strand, within HP15_9 at 10.417 kb on - strand, within HP15_9 at 10.444 kb on + strand, within HP15_9 at 10.482 kb on + strand, within HP15_9 at 10.506 kb on - strand, within HP15_9 at 10.560 kb on - strand, within HP15_9 at 10.608 kb on - strand, within HP15_9 at 10.698 kb on - strand, within HP15_9 at 10.720 kb on + strand, within HP15_9 at 10.728 kb on - strand, within HP15_9 at 10.739 kb on + strand, within HP15_9 at 10.739 kb on + strand, within HP15_9 at 10.747 kb on - strand, within HP15_9 at 10.747 kb on - strand, within HP15_9 at 10.747 kb on - strand, within HP15_9 at 10.747 kb on - strand, within HP15_9 at 10.787 kb on + strand, within HP15_9 at 10.792 kb on + strand, within HP15_9 at 10.792 kb on + strand, within HP15_9 at 10.800 kb on - strand, within HP15_9 at 10.826 kb on + strand, within HP15_9 at 10.831 kb on + strand, within HP15_9 at 10.836 kb on - strand, within HP15_9 at 10.850 kb on + strand, within HP15_9 at 10.858 kb on - strand, within HP15_9 at 10.881 kb on + strand, within HP15_9 at 10.881 kb on + strand, within HP15_9 at 10.881 kb on + strand, within HP15_9 at 10.882 kb on - strand, within HP15_9 at 10.899 kb on - strand, within HP15_9 at 10.899 kb on - strand, within HP15_9 at 10.899 kb on - strand, within HP15_9 at 10.954 kb on - strand, within HP15_9 at 10.954 kb on - strand, within HP15_9 at 11.046 kb on + strand, within HP15_9 at 11.093 kb on + strand, within HP15_9 at 11.171 kb on + strand at 11.277 kb on - strand at 11.334 kb on + strand at 11.338 kb on - strand at 11.357 kb on - strand at 11.362 kb on - strand at 11.400 kb on + strand at 11.427 kb on - strand at 11.448 kb on - strand at 11.500 kb on - strand at 11.609 kb on + strand at 11.609 kb on + strand at 11.701 kb on + strand, within HP15_10 at 11.701 kb on + strand, within HP15_10 at 11.709 kb on - strand, within HP15_10 at 11.709 kb on - strand, within HP15_10 at 11.773 kb on - strand, within HP15_10 at 11.788 kb on + strand, within HP15_10 at 11.788 kb on + strand, within HP15_10 at 11.788 kb on + strand, within HP15_10 at 11.788 kb on + strand, within HP15_10 at 11.790 kb on + strand, within HP15_10 at 11.796 kb on - strand, within HP15_10 at 11.832 kb on - strand, within HP15_10 at 11.838 kb on + strand, within HP15_10 at 11.848 kb on + strand, within HP15_10 at 11.890 kb on + strand, within HP15_10 at 11.895 kb on + strand, within HP15_10 at 11.903 kb on + strand, within HP15_10 at 11.903 kb on - strand, within HP15_10 at 11.916 kb on - strand, within HP15_10 at 11.960 kb on - strand, within HP15_10 at 11.974 kb on - strand, within HP15_10 at 12.163 kb on + strand, within HP15_10 at 12.169 kb on + strand, within HP15_10 at 12.169 kb on + strand, within HP15_10 at 12.174 kb on + strand, within HP15_10 at 12.192 kb on - strand, within HP15_10 at 12.202 kb on + strand, within HP15_10 at 12.202 kb on + strand, within HP15_10 at 12.215 kb on - strand, within HP15_10 at 12.229 kb on - strand, within HP15_10 at 12.248 kb on - strand, within HP15_10 at 12.266 kb on + strand, within HP15_10 at 12.279 kb on - strand, within HP15_10 at 12.311 kb on + strand, within HP15_10 at 12.324 kb on + strand, within HP15_10 at 12.374 kb on - strand, within HP15_10 at 12.384 kb on + strand, within HP15_10 at 12.386 kb on + strand, within HP15_10 at 12.445 kb on + strand, within HP15_10 at 12.461 kb on - strand, within HP15_10 at 12.563 kb on - strand, within HP15_10 at 12.643 kb on + strand, within HP15_10 at 12.764 kb on + strand, within HP15_10 at 12.789 kb on + strand, within HP15_10 at 12.793 kb on - strand, within HP15_10 at 12.875 kb on + strand, within HP15_10 at 12.882 kb on - strand, within HP15_10 at 12.949 kb on + strand, within HP15_10 at 12.949 kb on + strand, within HP15_10 at 12.949 kb on + strand, within HP15_10 at 12.957 kb on - strand, within HP15_10 at 12.992 kb on + strand, within HP15_10 at 13.008 kb on - strand, within HP15_10 at 13.008 kb on - strand, within HP15_10 at 13.011 kb on + strand, within HP15_10 at 13.011 kb on + strand, within HP15_10 at 13.016 kb on + strand, within HP15_10 at 13.019 kb on - strand, within HP15_10 at 13.024 kb on - strand, within HP15_10 at 13.093 kb on + strand, within HP15_10 at 13.106 kb on - strand, within HP15_10 at 13.107 kb on + strand, within HP15_10 at 13.115 kb on - strand, within HP15_10 at 13.115 kb on - strand, within HP15_10 at 13.188 kb on + strand, within HP15_10 at 13.268 kb on - strand, within HP15_10 at 13.312 kb on - strand, within HP15_10 at 13.331 kb on + strand, within HP15_10 at 13.337 kb on - strand, within HP15_10 at 13.339 kb on - strand, within HP15_10 at 13.339 kb on - strand, within HP15_10 at 13.339 kb on - strand, within HP15_10 at 13.344 kb on + strand, within HP15_10 at 13.352 kb on - strand, within HP15_10 at 13.365 kb on + strand, within HP15_10 at 13.365 kb on + strand, within HP15_10 at 13.398 kb on + strand, within HP15_10 at 13.455 kb on + strand, within HP15_10 at 13.462 kb on + strand, within HP15_10 at 13.462 kb on + strand, within HP15_10 at 13.463 kb on - strand, within HP15_10 at 13.467 kb on + strand, within HP15_10 at 13.467 kb on + strand, within HP15_10 at 13.467 kb on + strand, within HP15_10 at 13.475 kb on - strand, within HP15_10 at 13.475 kb on - strand, within HP15_10 at 13.512 kb on - strand, within HP15_10 at 13.589 kb on - strand, within HP15_10 at 13.599 kb on + strand, within HP15_10 at 13.599 kb on + strand, within HP15_10 at 13.599 kb on + strand, within HP15_10 at 13.675 kb on - strand at 13.766 kb on + strand at 13.883 kb on - strand at 13.896 kb on - strand at 13.933 kb on + strand at 13.941 kb on - strand at 13.941 kb on - strand at 13.976 kb on - strand at 14.148 kb on - strand, within HP15_11 at 14.245 kb on + strand, within HP15_11 at 14.271 kb on - strand, within HP15_11 at 14.443 kb on - strand, within HP15_11 at 14.487 kb on + strand, within HP15_11 at 14.535 kb on - strand, within HP15_11 at 14.554 kb on + strand, within HP15_11 at 14.562 kb on - strand, within HP15_11 at 14.566 kb on - strand, within HP15_11 at 14.578 kb on - strand, within HP15_11 at 14.583 kb on - strand, within HP15_11 at 14.583 kb on - strand, within HP15_11 at 14.620 kb on + strand, within HP15_11 at 14.707 kb on + strand, within HP15_11 at 14.715 kb on - strand, within HP15_11 at 14.754 kb on + strand, within HP15_11 at 14.796 kb on + strand, within HP15_11 at 14.847 kb on + strand at 14.872 kb on + strand at 14.873 kb on + strand at 14.879 kb on + strand at 14.880 kb on - strand at 14.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 10,389 + HP15_9 0.26 +0.9 10,390 + HP15_9 0.26 -0.3 10,417 - HP15_9 0.28 -0.4 10,444 + HP15_9 0.30 -2.0 10,482 + HP15_9 0.34 +1.2 10,506 - HP15_9 0.36 -0.9 10,560 - HP15_9 0.40 -1.5 10,608 - HP15_9 0.45 +0.7 10,698 - HP15_9 0.52 -1.6 10,720 + HP15_9 0.54 -0.5 10,728 - HP15_9 0.55 +1.3 10,739 + HP15_9 0.56 -0.3 10,739 + HP15_9 0.56 -0.8 10,747 - HP15_9 0.57 -1.3 10,747 - HP15_9 0.57 -0.2 10,747 - HP15_9 0.57 +3.1 10,747 - HP15_9 0.57 +2.3 10,787 + HP15_9 0.60 -3.9 10,792 + HP15_9 0.60 +0.3 10,792 + HP15_9 0.60 +1.2 10,800 - HP15_9 0.61 +1.1 10,826 + HP15_9 0.63 +2.0 10,831 + HP15_9 0.64 +0.9 10,836 - HP15_9 0.64 -0.4 10,850 + HP15_9 0.65 -1.3 10,858 - HP15_9 0.66 +1.3 10,881 + HP15_9 0.68 -1.8 10,881 + HP15_9 0.68 -1.3 10,881 + HP15_9 0.68 +1.6 10,882 - HP15_9 0.68 -0.7 10,899 - HP15_9 0.70 +2.5 10,899 - HP15_9 0.70 -0.5 10,899 - HP15_9 0.70 +0.8 10,954 - HP15_9 0.74 -1.3 10,954 - HP15_9 0.74 -2.4 11,046 + HP15_9 0.82 -0.8 11,093 + HP15_9 0.86 -0.1 11,171 + +1.1 11,277 - -0.3 11,334 + +0.1 11,338 - -1.9 11,357 - +0.1 11,362 - -1.2 11,400 + -1.6 11,427 - -1.0 11,448 - -0.3 11,500 - -0.9 11,609 + -0.4 11,609 + +1.8 11,701 + HP15_10 0.13 +0.7 11,701 + HP15_10 0.13 +0.1 11,709 - HP15_10 0.13 +0.8 11,709 - HP15_10 0.13 -0.5 11,773 - HP15_10 0.16 +0.6 11,788 + HP15_10 0.16 +0.0 11,788 + HP15_10 0.16 -0.6 11,788 + HP15_10 0.16 +2.0 11,788 + HP15_10 0.16 -2.2 11,790 + HP15_10 0.16 -0.8 11,796 - HP15_10 0.17 +1.9 11,832 - HP15_10 0.18 -0.2 11,838 + HP15_10 0.18 -0.3 11,848 + HP15_10 0.19 +1.0 11,890 + HP15_10 0.20 +1.7 11,895 + HP15_10 0.20 -1.1 11,903 + HP15_10 0.21 -1.0 11,903 - HP15_10 0.21 +1.2 11,916 - HP15_10 0.21 -0.4 11,960 - HP15_10 0.23 +1.0 11,974 - HP15_10 0.24 -2.0 12,163 + HP15_10 0.31 +1.2 12,169 + HP15_10 0.31 +0.1 12,169 + HP15_10 0.31 +1.2 12,174 + HP15_10 0.31 +0.3 12,192 - HP15_10 0.32 +0.3 12,202 + HP15_10 0.33 +0.6 12,202 + HP15_10 0.33 -0.5 12,215 - HP15_10 0.33 +1.1 12,229 - HP15_10 0.34 +0.3 12,248 - HP15_10 0.34 +0.3 12,266 + HP15_10 0.35 +1.5 12,279 - HP15_10 0.36 +2.3 12,311 + HP15_10 0.37 -1.4 12,324 + HP15_10 0.37 -0.3 12,374 - HP15_10 0.39 -1.0 12,384 + HP15_10 0.40 +1.7 12,386 + HP15_10 0.40 +2.2 12,445 + HP15_10 0.42 -0.1 12,461 - HP15_10 0.43 -3.2 12,563 - HP15_10 0.47 +1.1 12,643 + HP15_10 0.50 +0.7 12,764 + HP15_10 0.55 +0.4 12,789 + HP15_10 0.56 +0.1 12,793 - HP15_10 0.56 -0.3 12,875 + HP15_10 0.59 -0.4 12,882 - HP15_10 0.59 +0.4 12,949 + HP15_10 0.62 +0.2 12,949 + HP15_10 0.62 -1.4 12,949 + HP15_10 0.62 -0.4 12,957 - HP15_10 0.62 -1.1 12,992 + HP15_10 0.64 +3.4 13,008 - HP15_10 0.64 +2.2 13,008 - HP15_10 0.64 +0.9 13,011 + HP15_10 0.64 -0.6 13,011 + HP15_10 0.64 +0.9 13,016 + HP15_10 0.65 +2.1 13,019 - HP15_10 0.65 -0.7 13,024 - HP15_10 0.65 -1.0 13,093 + HP15_10 0.68 -0.3 13,106 - HP15_10 0.68 +1.8 13,107 + HP15_10 0.68 +0.6 13,115 - HP15_10 0.69 -0.4 13,115 - HP15_10 0.69 +2.4 13,188 + HP15_10 0.71 -0.2 13,268 - HP15_10 0.75 -0.5 13,312 - HP15_10 0.76 -0.2 13,331 + HP15_10 0.77 -1.8 13,337 - HP15_10 0.77 +1.9 13,339 - HP15_10 0.77 +1.6 13,339 - HP15_10 0.77 -0.6 13,339 - HP15_10 0.77 -0.7 13,344 + HP15_10 0.78 +0.5 13,352 - HP15_10 0.78 -0.9 13,365 + HP15_10 0.78 +0.9 13,365 + HP15_10 0.78 +0.3 13,398 + HP15_10 0.80 +0.7 13,455 + HP15_10 0.82 +3.1 13,462 + HP15_10 0.82 -1.0 13,462 + HP15_10 0.82 -0.4 13,463 - HP15_10 0.82 -0.1 13,467 + HP15_10 0.82 +0.1 13,467 + HP15_10 0.82 +0.0 13,467 + HP15_10 0.82 +0.4 13,475 - HP15_10 0.83 -1.5 13,475 - HP15_10 0.83 -1.2 13,512 - HP15_10 0.84 -0.5 13,589 - HP15_10 0.87 -0.4 13,599 + HP15_10 0.88 -0.1 13,599 + HP15_10 0.88 +1.4 13,599 + HP15_10 0.88 -2.1 13,675 - +0.9 13,766 + +1.8 13,883 - +0.3 13,896 - -0.3 13,933 + +0.8 13,941 - -0.4 13,941 - +0.6 13,976 - -1.6 14,148 - HP15_11 0.18 +1.5 14,245 + HP15_11 0.28 +0.7 14,271 - HP15_11 0.31 +1.1 14,443 - HP15_11 0.48 +0.2 14,487 + HP15_11 0.53 -0.1 14,535 - HP15_11 0.58 +0.4 14,554 + HP15_11 0.60 -0.1 14,562 - HP15_11 0.61 +1.4 14,566 - HP15_11 0.61 +2.0 14,578 - HP15_11 0.62 +1.0 14,583 - HP15_11 0.63 -0.4 14,583 - HP15_11 0.63 -0.9 14,620 + HP15_11 0.67 -0.8 14,707 + HP15_11 0.76 -0.4 14,715 - HP15_11 0.77 +0.4 14,754 + HP15_11 0.81 -0.6 14,796 + HP15_11 0.85 -2.1 14,847 + +0.6 14,872 + +0.5 14,873 + -0.8 14,879 + +0.7 14,880 - +1.6 14,903 - +1.6
Or see this region's nucleotide sequence