Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_969 and HP15_970 overlap by 75 nucleotides HP15_970 and HP15_971 are separated by 64 nucleotides HP15_971 and HP15_972 are separated by 191 nucleotides HP15_972 and HP15_973 are separated by 204 nucleotides HP15_973 and HP15_974 are separated by 99 nucleotides
HP15_969: HP15_969 - hypothetical protein, at 982,513 to 983,028
_969
HP15_970: HP15_970 - hypothetical protein, at 982,954 to 983,067
_970
HP15_971: HP15_971 - NIPSNAP family containing protein, at 983,132 to 983,437
_971
HP15_972: HP15_972 - hypothetical protein, at 983,629 to 984,114
_972
HP15_973: HP15_973 - conserved hypothetical protein, at 984,319 to 984,501
_973
HP15_974: HP15_974 - hypothetical protein, at 984,601 to 984,933
_974
Position (kb) 983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 982.739 kb on - strand, within HP15_969 at 982.761 kb on + strand, within HP15_969 at 982.815 kb on + strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.830 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 983.033 kb on + strand, within HP15_970 at 983.035 kb on + strand, within HP15_970 at 983.048 kb on - strand, within HP15_970 at 983.134 kb on - strand at 983.165 kb on - strand, within HP15_971 at 983.175 kb on - strand, within HP15_971 at 983.200 kb on + strand, within HP15_971 at 983.208 kb on - strand, within HP15_971 at 983.223 kb on - strand, within HP15_971 at 983.224 kb on - strand, within HP15_971 at 983.326 kb on - strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.400 kb on + strand, within HP15_971 at 983.403 kb on - strand, within HP15_971 at 983.472 kb on - strand at 983.491 kb on + strand at 983.504 kb on + strand at 983.530 kb on - strand at 983.657 kb on - strand at 983.709 kb on - strand, within HP15_972 at 983.721 kb on - strand, within HP15_972 at 983.871 kb on + strand, within HP15_972 at 984.040 kb on + strand, within HP15_972 at 984.047 kb on + strand, within HP15_972 at 984.239 kb on - strand at 984.295 kb on + strand at 984.295 kb on - strand at 984.481 kb on - strand, within HP15_973 at 984.481 kb on - strand, within HP15_973 at 984.517 kb on + strand at 984.532 kb on - strand at 984.651 kb on - strand, within HP15_974 at 984.734 kb on + strand, within HP15_974 at 984.787 kb on + strand, within HP15_974 at 984.952 kb on + strand at 984.990 kb on + strand at 985.055 kb on + strand at 985.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 982,739 - HP15_969 0.44 -0.1 982,761 + HP15_969 0.48 -1.4 982,815 + HP15_969 0.59 +0.5 982,823 - HP15_969 0.60 +0.2 982,823 - HP15_969 0.60 -1.3 982,823 - HP15_969 0.60 +0.1 982,823 - HP15_969 0.60 -0.0 982,830 + HP15_969 0.61 +1.4 982,915 + HP15_969 0.78 +1.6 982,915 + HP15_969 0.78 -1.3 982,923 - HP15_969 0.79 -1.1 982,923 - HP15_969 0.79 -1.2 982,923 - HP15_969 0.79 -0.5 982,937 - HP15_969 0.82 +1.6 982,937 - HP15_969 0.82 -1.7 983,033 + HP15_970 0.69 -1.1 983,035 + HP15_970 0.71 +1.6 983,048 - HP15_970 0.82 -0.2 983,134 - -0.7 983,165 - HP15_971 0.11 +2.1 983,175 - HP15_971 0.14 +0.6 983,200 + HP15_971 0.22 -0.3 983,208 - HP15_971 0.25 +0.2 983,223 - HP15_971 0.30 +2.0 983,224 - HP15_971 0.30 +1.4 983,326 - HP15_971 0.63 +1.9 983,393 + HP15_971 0.85 -1.1 983,393 + HP15_971 0.85 -0.9 983,393 + HP15_971 0.85 -0.5 983,393 + HP15_971 0.85 -0.1 983,400 + HP15_971 0.88 -1.1 983,403 - HP15_971 0.89 +0.0 983,472 - +0.5 983,491 + +1.6 983,504 + -0.1 983,530 - -0.5 983,657 - +0.5 983,709 - HP15_972 0.16 -2.2 983,721 - HP15_972 0.19 +1.6 983,871 + HP15_972 0.50 +1.8 984,040 + HP15_972 0.85 +2.0 984,047 + HP15_972 0.86 +1.4 984,239 - -0.7 984,295 + -0.5 984,295 - -0.5 984,481 - HP15_973 0.89 -0.1 984,481 - HP15_973 0.89 +0.1 984,517 + -0.6 984,532 - -0.7 984,651 - HP15_974 0.15 +0.3 984,734 + HP15_974 0.40 -1.0 984,787 + HP15_974 0.56 +2.1 984,952 + +1.4 984,990 + -0.6 985,055 + -0.3 985,063 - -0.8
Or see this region's nucleotide sequence