Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_944 and HP15_945 are separated by 345 nucleotides HP15_945 and HP15_946 are separated by 89 nucleotides HP15_946 and HP15_947 overlap by 4 nucleotides
HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452
_944
HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255
_945
HP15_946: HP15_946 - conserved hypothetical protein, at 963,345 to 963,581
_946
HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903
_947
Position (kb) 961
962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 960.810 kb on + strand, within HP15_944 at 960.833 kb on - strand, within HP15_944 at 961.077 kb on + strand, within HP15_944 at 961.085 kb on - strand, within HP15_944 at 961.254 kb on + strand, within HP15_944 at 961.273 kb on - strand, within HP15_944 at 961.334 kb on + strand at 961.635 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.894 kb on - strand at 961.900 kb on + strand at 961.908 kb on - strand at 961.908 kb on - strand at 962.006 kb on - strand, within HP15_945 at 962.050 kb on - strand, within HP15_945 at 962.072 kb on + strand, within HP15_945 at 962.080 kb on - strand, within HP15_945 at 962.110 kb on + strand, within HP15_945 at 962.139 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.241 kb on + strand, within HP15_945 at 962.293 kb on - strand, within HP15_945 at 962.386 kb on - strand, within HP15_945 at 962.396 kb on - strand, within HP15_945 at 962.526 kb on + strand, within HP15_945 at 962.544 kb on + strand, within HP15_945 at 962.547 kb on - strand, within HP15_945 at 962.549 kb on + strand, within HP15_945 at 962.559 kb on - strand, within HP15_945 at 962.584 kb on + strand, within HP15_945 at 962.592 kb on - strand, within HP15_945 at 962.610 kb on - strand, within HP15_945 at 962.612 kb on + strand, within HP15_945 at 962.620 kb on + strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.683 kb on + strand, within HP15_945 at 962.691 kb on - strand, within HP15_945 at 962.699 kb on - strand, within HP15_945 at 962.754 kb on - strand, within HP15_945 at 962.885 kb on + strand, within HP15_945 at 962.930 kb on + strand, within HP15_945 at 962.975 kb on - strand, within HP15_945 at 962.985 kb on - strand, within HP15_945 at 962.996 kb on + strand, within HP15_945 at 962.997 kb on - strand, within HP15_945 at 963.012 kb on - strand, within HP15_945 at 963.185 kb on + strand at 963.313 kb on - strand at 963.360 kb on - strand at 963.411 kb on - strand, within HP15_946 at 963.411 kb on - strand, within HP15_946 at 963.474 kb on - strand, within HP15_946 at 963.603 kb on + strand at 963.651 kb on + strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.795 kb on - strand, within HP15_947 at 963.795 kb on - strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.845 kb on - strand, within HP15_947 at 963.859 kb on - strand, within HP15_947 at 963.943 kb on + strand, within HP15_947 at 964.075 kb on + strand, within HP15_947 at 964.083 kb on - strand, within HP15_947 at 964.088 kb on - strand, within HP15_947 at 964.239 kb on - strand, within HP15_947 at 964.242 kb on + strand, within HP15_947
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 960,810 + HP15_944 0.48 -0.1 960,833 - HP15_944 0.49 -0.5 961,077 + HP15_944 0.69 -0.2 961,085 - HP15_944 0.70 -1.4 961,254 + HP15_944 0.84 -1.5 961,273 - HP15_944 0.85 +2.0 961,334 + -1.0 961,635 - -0.0 961,637 - -0.9 961,637 - +0.2 961,637 - +1.1 961,894 - +1.3 961,900 + -0.6 961,908 - -1.1 961,908 - +1.3 962,006 - HP15_945 0.14 -0.1 962,050 - HP15_945 0.17 +0.1 962,072 + HP15_945 0.19 -0.2 962,080 - HP15_945 0.19 -0.5 962,110 + HP15_945 0.21 -2.2 962,139 + HP15_945 0.23 +2.0 962,240 + HP15_945 0.30 +0.9 962,240 + HP15_945 0.30 +2.5 962,241 + HP15_945 0.30 +2.0 962,293 - HP15_945 0.34 +1.4 962,386 - HP15_945 0.40 -2.1 962,396 - HP15_945 0.41 -0.8 962,526 + HP15_945 0.50 -0.1 962,544 + HP15_945 0.51 -0.8 962,547 - HP15_945 0.51 -0.9 962,549 + HP15_945 0.52 +2.0 962,559 - HP15_945 0.52 +0.1 962,584 + HP15_945 0.54 -0.8 962,592 - HP15_945 0.54 -0.1 962,610 - HP15_945 0.56 -2.9 962,612 + HP15_945 0.56 -1.1 962,620 + HP15_945 0.56 -1.7 962,620 - HP15_945 0.56 -0.3 962,620 - HP15_945 0.56 -0.5 962,620 - HP15_945 0.56 -0.2 962,683 + HP15_945 0.61 -1.9 962,691 - HP15_945 0.61 +1.5 962,699 - HP15_945 0.62 +1.1 962,754 - HP15_945 0.66 -0.9 962,885 + HP15_945 0.75 +2.2 962,930 + HP15_945 0.78 +2.3 962,975 - HP15_945 0.81 +2.3 962,985 - HP15_945 0.81 -0.2 962,996 + HP15_945 0.82 -0.3 962,997 - HP15_945 0.82 +0.8 963,012 - HP15_945 0.83 +1.7 963,185 + -2.0 963,313 - +0.6 963,360 - -0.3 963,411 - HP15_946 0.28 -0.6 963,411 - HP15_946 0.28 -0.9 963,474 - HP15_946 0.54 -0.6 963,603 + -0.5 963,651 + +1.4 963,659 - +0.1 963,659 - -0.2 963,659 - -0.4 963,795 - HP15_947 0.16 +2.3 963,795 - HP15_947 0.16 +1.8 963,837 + HP15_947 0.20 +1.1 963,837 + HP15_947 0.20 -1.3 963,845 - HP15_947 0.20 -0.9 963,859 - HP15_947 0.21 -0.9 963,943 + HP15_947 0.28 -1.3 964,075 + HP15_947 0.37 +0.3 964,083 - HP15_947 0.38 +2.2 964,088 - HP15_947 0.38 -2.2 964,239 - HP15_947 0.50 +1.9 964,242 + HP15_947 0.50 -2.5
Or see this region's nucleotide sequence