Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_940 and HP15_941 are separated by 302 nucleotides HP15_941 and HP15_942 are separated by 255 nucleotides HP15_942 and HP15_943 are separated by 75 nucleotides
HP15_940: HP15_940 - putrescine ABC transporter, periplasmic putrescine-binding protein, at 955,039 to 956,145
_940
HP15_941: HP15_941 - conserved hypothetical protein, secreted, at 956,448 to 956,774
_941
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 956.100 kb on + strand at 956.101 kb on + strand at 956.108 kb on - strand at 956.134 kb on - strand at 956.201 kb on + strand at 956.201 kb on + strand at 956.206 kb on + strand at 956.206 kb on + strand at 956.211 kb on + strand at 956.214 kb on - strand at 956.214 kb on - strand at 956.219 kb on - strand at 956.237 kb on + strand at 956.260 kb on - strand at 956.273 kb on - strand at 956.284 kb on - strand at 956.310 kb on - strand at 956.422 kb on - strand at 956.465 kb on + strand at 956.571 kb on + strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.624 kb on + strand, within HP15_941 at 956.671 kb on - strand, within HP15_941 at 956.730 kb on + strand, within HP15_941 at 956.873 kb on + strand at 956.956 kb on + strand at 956.956 kb on + strand at 956.968 kb on + strand at 956.976 kb on - strand at 957.256 kb on - strand, within HP15_942 at 957.298 kb on + strand, within HP15_942 at 957.306 kb on - strand, within HP15_942 at 957.468 kb on - strand, within HP15_942 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942 at 957.813 kb on + strand, within HP15_942 at 957.843 kb on + strand, within HP15_942 at 957.881 kb on + strand, within HP15_942 at 957.950 kb on - strand, within HP15_942 at 958.165 kb on + strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.184 kb on - strand, within HP15_942 at 958.221 kb on - strand, within HP15_942 at 958.462 kb on + strand at 958.462 kb on + strand at 958.551 kb on - strand at 958.634 kb on - strand, within HP15_943 at 958.796 kb on - strand, within HP15_943 at 958.807 kb on + strand, within HP15_943 at 959.070 kb on + strand, within HP15_943 at 959.208 kb on - strand, within HP15_943 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 956,100 + -0.3 956,101 + -0.2 956,108 - -0.4 956,134 - +1.7 956,201 + -0.1 956,201 + -0.3 956,206 + +1.7 956,206 + +0.2 956,211 + +1.7 956,214 - +2.0 956,214 - +2.0 956,219 - -1.5 956,237 + +0.4 956,260 - +2.1 956,273 - -1.4 956,284 - +2.0 956,310 - -1.0 956,422 - +0.5 956,465 + +1.6 956,571 + HP15_941 0.38 +0.5 956,574 - HP15_941 0.39 -0.5 956,574 - HP15_941 0.39 -2.1 956,624 + HP15_941 0.54 +0.3 956,671 - HP15_941 0.68 +1.6 956,730 + HP15_941 0.86 -0.3 956,873 + +0.1 956,956 + -0.0 956,956 + -0.9 956,968 + +1.8 956,976 - -0.6 957,256 - HP15_942 0.17 -0.7 957,298 + HP15_942 0.20 -0.3 957,306 - HP15_942 0.20 -0.0 957,468 - HP15_942 0.32 -0.4 957,548 + HP15_942 0.38 -0.7 957,607 + HP15_942 0.42 -0.3 957,683 - HP15_942 0.48 -0.9 957,750 + HP15_942 0.53 -0.4 957,813 + HP15_942 0.57 +2.2 957,843 + HP15_942 0.60 -0.5 957,881 + HP15_942 0.62 -1.3 957,950 - HP15_942 0.67 -0.6 958,165 + HP15_942 0.83 -0.8 958,173 - HP15_942 0.84 +1.9 958,173 - HP15_942 0.84 -0.6 958,184 - HP15_942 0.85 -0.7 958,221 - HP15_942 0.87 +3.0 958,462 + +2.0 958,462 + -0.2 958,551 - +0.8 958,634 - HP15_943 0.11 +0.9 958,796 - HP15_943 0.21 -0.7 958,807 + HP15_943 0.22 -1.5 959,070 + HP15_943 0.40 -1.7 959,208 - HP15_943 0.49 +0.6 959,261 - HP15_943 0.52 +1.1 959,341 + HP15_943 0.57 -0.8 959,349 - HP15_943 0.58 -0.5 959,360 + HP15_943 0.59 -2.1
Or see this region's nucleotide sequence