Strain Fitness in Marinobacter adhaerens HP15 around HP15_94

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_91 and HP15_92 are separated by 22 nucleotidesHP15_92 and HP15_93 are separated by 26 nucleotidesHP15_93 and HP15_94 are separated by 42 nucleotidesHP15_94 and HP15_95 are separated by 75 nucleotides HP15_91: HP15_91 - conserved hypothetical protein, membrane, at 95,809 to 96,651 _91 HP15_92: HP15_92 - DSBA oxidoreductase, at 96,674 to 97,312 _92 HP15_93: HP15_93 - hypothetical protein, at 97,339 to 97,446 _93 HP15_94: HP15_94 - sodium: bile acid symporter family protein-like protein, at 97,489 to 98,061 _94 HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925 _95 Position (kb) 97 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 96.498 kb on + strand, within HP15_91at 96.506 kb on - strand, within HP15_91at 96.506 kb on - strand, within HP15_91at 96.527 kb on + strand, within HP15_91at 96.531 kb on - strand, within HP15_91at 96.538 kb on + strand, within HP15_91at 96.541 kb on - strand, within HP15_91at 96.682 kb on - strandat 96.691 kb on + strandat 96.693 kb on - strandat 96.707 kb on + strandat 96.723 kb on - strandat 96.723 kb on - strandat 96.754 kb on + strand, within HP15_92at 96.794 kb on - strand, within HP15_92at 96.835 kb on + strand, within HP15_92at 96.840 kb on + strand, within HP15_92at 96.844 kb on - strand, within HP15_92at 96.845 kb on + strand, within HP15_92at 96.904 kb on + strand, within HP15_92at 96.912 kb on - strand, within HP15_92at 96.913 kb on + strand, within HP15_92at 96.928 kb on - strand, within HP15_92at 96.947 kb on + strand, within HP15_92at 96.955 kb on - strand, within HP15_92at 97.014 kb on - strand, within HP15_92at 97.032 kb on - strand, within HP15_92at 97.034 kb on + strand, within HP15_92at 97.039 kb on + strand, within HP15_92at 97.053 kb on - strand, within HP15_92at 97.088 kb on + strand, within HP15_92at 97.158 kb on + strand, within HP15_92at 97.305 kb on - strandat 97.305 kb on - strandat 97.310 kb on + strandat 97.336 kb on + strandat 97.429 kb on + strand, within HP15_93at 97.457 kb on + strandat 97.457 kb on + strandat 97.465 kb on - strandat 97.494 kb on - strandat 97.576 kb on + strand, within HP15_94at 97.649 kb on - strand, within HP15_94at 97.649 kb on - strand, within HP15_94at 97.697 kb on - strand, within HP15_94at 97.746 kb on - strand, within HP15_94at 97.796 kb on - strand, within HP15_94at 97.796 kb on - strand, within HP15_94at 97.915 kb on + strand, within HP15_94at 97.949 kb on + strand, within HP15_94at 97.957 kb on + strand, within HP15_94at 97.957 kb on + strand, within HP15_94at 97.957 kb on + strand, within HP15_94at 97.959 kb on + strand, within HP15_94at 97.965 kb on - strand, within HP15_94at 97.965 kb on - strand, within HP15_94at 97.967 kb on - strand, within HP15_94at 97.967 kb on - strand, within HP15_94at 97.967 kb on - strand, within HP15_94at 97.985 kb on - strand, within HP15_94at 98.027 kb on + strandat 98.027 kb on + strandat 98.027 kb on + strandat 98.027 kb on + strandat 98.035 kb on - strandat 98.065 kb on - strandat 98.067 kb on + strandat 98.067 kb on + strandat 98.075 kb on - strandat 98.134 kb on - strandat 98.145 kb on + strandat 98.245 kb on + strand, within HP15_95at 98.304 kb on - strand, within HP15_95at 98.342 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.414 kb on - strand, within HP15_95at 98.427 kb on + strand, within HP15_95at 98.429 kb on - strand, within HP15_95at 98.477 kb on - strand, within HP15_95at 98.550 kb on - strand, within HP15_95at 98.576 kb on + strand, within HP15_95at 98.621 kb on + strand, within HP15_95at 98.635 kb on - strand, within HP15_95at 98.666 kb on - strand, within HP15_95at 98.812 kb on + strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.826 kb on - strand, within HP15_95at 98.852 kb on - strandat 98.904 kb on - strandat 98.962 kb on + strandat 98.970 kb on - strandat 98.970 kb on - strandat 98.999 kb on + strandat 98.999 kb on + strandat 99.007 kb on - strandat 99.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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96,498 + HP15_91 0.82 +4.1
96,506 - HP15_91 0.83 +3.1
96,506 - HP15_91 0.83 -0.3
96,527 + HP15_91 0.85 -0.7
96,531 - HP15_91 0.86 +2.1
96,538 + HP15_91 0.86 -0.4
96,541 - HP15_91 0.87 -0.6
96,682 - +1.2
96,691 + +0.4
96,693 - +0.7
96,707 + +0.1
96,723 - +1.1
96,723 - -0.6
96,754 + HP15_92 0.13 +2.4
96,794 - HP15_92 0.19 +2.2
96,835 + HP15_92 0.25 -1.3
96,840 + HP15_92 0.26 -1.3
96,844 - HP15_92 0.27 -0.0
96,845 + HP15_92 0.27 +2.3
96,904 + HP15_92 0.36 +0.0
96,912 - HP15_92 0.37 +2.1
96,913 + HP15_92 0.37 -1.6
96,928 - HP15_92 0.40 -1.2
96,947 + HP15_92 0.43 -3.6
96,955 - HP15_92 0.44 +0.2
97,014 - HP15_92 0.53 +0.3
97,032 - HP15_92 0.56 -0.5
97,034 + HP15_92 0.56 -0.9
97,039 + HP15_92 0.57 +0.1
97,053 - HP15_92 0.59 -0.6
97,088 + HP15_92 0.65 -0.5
97,158 + HP15_92 0.76 +1.1
97,305 - -1.0
97,305 - -0.0
97,310 + +0.7
97,336 + -0.8
97,429 + HP15_93 0.83 +2.4
97,457 + -1.0
97,457 + -0.3
97,465 - -0.0
97,494 - -1.2
97,576 + HP15_94 0.15 -1.3
97,649 - HP15_94 0.28 +2.1
97,649 - HP15_94 0.28 -3.1
97,697 - HP15_94 0.36 -0.3
97,746 - HP15_94 0.45 -2.0
97,796 - HP15_94 0.54 +0.1
97,796 - HP15_94 0.54 +1.5
97,915 + HP15_94 0.74 +0.5
97,949 + HP15_94 0.80 +1.9
97,957 + HP15_94 0.82 -0.1
97,957 + HP15_94 0.82 +0.6
97,957 + HP15_94 0.82 +1.0
97,959 + HP15_94 0.82 -0.2
97,965 - HP15_94 0.83 -0.6
97,965 - HP15_94 0.83 -1.2
97,967 - HP15_94 0.83 +1.0
97,967 - HP15_94 0.83 +1.5
97,967 - HP15_94 0.83 -0.3
97,985 - HP15_94 0.87 -0.4
98,027 + +2.0
98,027 + +2.5
98,027 + -1.4
98,027 + -1.0
98,035 - -0.0
98,065 - -2.3
98,067 + +1.0
98,067 + +1.6
98,075 - +1.1
98,134 - +1.9
98,145 + +2.2
98,245 + HP15_95 0.14 -0.8
98,304 - HP15_95 0.21 -0.6
98,342 + HP15_95 0.26 +0.6
98,411 + HP15_95 0.35 +0.1
98,411 + HP15_95 0.35 +2.8
98,414 - HP15_95 0.35 -0.6
98,427 + HP15_95 0.37 +0.2
98,429 - HP15_95 0.37 +0.1
98,477 - HP15_95 0.43 +2.3
98,550 - HP15_95 0.52 -1.7
98,576 + HP15_95 0.56 -1.3
98,621 + HP15_95 0.61 +1.1
98,635 - HP15_95 0.63 +2.0
98,666 - HP15_95 0.67 +1.9
98,812 + HP15_95 0.86 +1.5
98,820 - HP15_95 0.87 +1.5
98,820 - HP15_95 0.87 -1.3
98,826 - HP15_95 0.87 +1.3
98,852 - +1.8
98,904 - +1.0
98,962 + -0.4
98,970 - -0.2
98,970 - -0.6
98,999 + +1.6
98,999 + -0.3
99,007 - -1.5
99,007 - +3.5

Or see this region's nucleotide sequence