Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_900 and HP15_901 are separated by 66 nucleotides HP15_901 and HP15_902 are separated by 209 nucleotides HP15_902 and HP15_903 are separated by 86 nucleotides
HP15_900: HP15_900 - hypothetical protein, at 913,491 to 913,652
_900
HP15_901: HP15_901 - TPR repeat, SEL1 subfamily protein-like protein, at 913,719 to 914,300
_901
HP15_902: HP15_902 - hypothetical protein, at 914,510 to 914,926
_902
HP15_903: HP15_903 - beta-lactamase domain protein, at 915,013 to 915,867
_903
Position (kb) 914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.558 kb on + strand, within HP15_900 at 913.627 kb on - strand, within HP15_900 at 913.660 kb on + strand at 913.815 kb on - strand, within HP15_901 at 913.900 kb on - strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 914.053 kb on - strand, within HP15_901 at 914.215 kb on + strand, within HP15_901 at 914.241 kb on + strand, within HP15_901 at 914.383 kb on + strand at 914.407 kb on - strand at 914.419 kb on - strand at 914.424 kb on - strand at 914.533 kb on - strand at 914.549 kb on + strand at 914.562 kb on - strand, within HP15_902 at 914.571 kb on + strand, within HP15_902 at 914.592 kb on + strand, within HP15_902 at 914.829 kb on - strand, within HP15_902 at 914.958 kb on + strand at 914.994 kb on - strand at 914.994 kb on - strand at 915.000 kb on + strand at 915.104 kb on + strand, within HP15_903 at 915.203 kb on - strand, within HP15_903 at 915.248 kb on - strand, within HP15_903 at 915.481 kb on + strand, within HP15_903 at 915.639 kb on - strand, within HP15_903 at 915.664 kb on - strand, within HP15_903 at 915.758 kb on + strand, within HP15_903 at 915.795 kb on - strand at 915.819 kb on - strand at 915.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 913,558 + HP15_900 0.41 -0.1 913,627 - HP15_900 0.84 +0.1 913,660 + -0.2 913,815 - HP15_901 0.16 +0.6 913,900 - HP15_901 0.31 +0.4 913,933 + HP15_901 0.37 +0.7 913,933 + HP15_901 0.37 +0.2 914,053 - HP15_901 0.57 +0.2 914,215 + HP15_901 0.85 -0.9 914,241 + HP15_901 0.90 -2.8 914,383 + +2.2 914,407 - -2.2 914,419 - -0.1 914,424 - +0.8 914,533 - +1.8 914,549 + +2.5 914,562 - HP15_902 0.12 -1.6 914,571 + HP15_902 0.15 +1.8 914,592 + HP15_902 0.20 +2.0 914,829 - HP15_902 0.76 +0.0 914,958 + -0.9 914,994 - -1.0 914,994 - -0.1 915,000 + +0.6 915,104 + HP15_903 0.11 +2.2 915,203 - HP15_903 0.22 -0.1 915,248 - HP15_903 0.27 +0.4 915,481 + HP15_903 0.55 -1.5 915,639 - HP15_903 0.73 -0.2 915,664 - HP15_903 0.76 -1.3 915,758 + HP15_903 0.87 +0.1 915,795 - +1.3 915,819 - +1.6 915,861 + -0.2
Or see this region's nucleotide sequence