Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_864 and HP15_865 are separated by 30 nucleotides HP15_865 and HP15_866 overlap by 10 nucleotides HP15_866 and HP15_867 are separated by 37 nucleotides HP15_867 and HP15_868 are separated by 21 nucleotides
HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852
_864
HP15_865: HP15_865 - abortive infection protein, at 886,883 to 887,473
_865
HP15_866: HP15_866 - conserved hypothetical protein, membrane, at 887,464 to 887,883
_866
HP15_867: HP15_867 - protein containing AIG2-like domain, at 887,921 to 888,274
_867
HP15_868: HP15_868 - transcriptional regulator, LysR family, at 888,296 to 889,177
_868
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 886.522 kb on + strand, within HP15_864 at 886.615 kb on + strand, within HP15_864 at 886.694 kb on + strand, within HP15_864 at 886.706 kb on + strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.716 kb on + strand, within HP15_864 at 886.790 kb on + strand at 886.925 kb on - strand at 887.011 kb on + strand, within HP15_865 at 887.021 kb on + strand, within HP15_865 at 887.195 kb on + strand, within HP15_865 at 887.252 kb on + strand, within HP15_865 at 887.270 kb on - strand, within HP15_865 at 887.318 kb on + strand, within HP15_865 at 887.367 kb on - strand, within HP15_865 at 887.376 kb on + strand, within HP15_865 at 887.424 kb on + strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.513 kb on - strand, within HP15_866 at 887.545 kb on + strand, within HP15_866 at 887.589 kb on + strand, within HP15_866 at 887.667 kb on + strand, within HP15_866 at 887.776 kb on - strand, within HP15_866 at 887.862 kb on + strand at 887.921 kb on - strand at 887.988 kb on + strand, within HP15_867 at 887.994 kb on + strand, within HP15_867 at 888.214 kb on + strand, within HP15_867 at 888.237 kb on + strand, within HP15_867 at 888.338 kb on + strand at 888.355 kb on - strand at 888.402 kb on - strand, within HP15_868 at 888.402 kb on - strand, within HP15_868 at 888.473 kb on + strand, within HP15_868 at 888.481 kb on - strand, within HP15_868 at 888.685 kb on - strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 886,522 + HP15_864 0.61 +2.1 886,615 + HP15_864 0.72 +1.7 886,694 + HP15_864 0.81 -1.7 886,706 + HP15_864 0.83 -1.7 886,714 - HP15_864 0.84 +0.1 886,714 - HP15_864 0.84 +2.1 886,716 + HP15_864 0.84 -1.0 886,790 + +1.5 886,925 - +3.9 887,011 + HP15_865 0.22 +2.3 887,021 + HP15_865 0.23 -0.7 887,195 + HP15_865 0.53 -1.2 887,252 + HP15_865 0.62 +1.8 887,270 - HP15_865 0.65 -0.6 887,318 + HP15_865 0.74 -1.0 887,367 - HP15_865 0.82 -1.7 887,376 + HP15_865 0.83 +0.8 887,424 + +1.7 887,432 - -1.9 887,432 - +1.9 887,513 - HP15_866 0.12 -0.4 887,545 + HP15_866 0.19 +0.8 887,589 + HP15_866 0.30 +2.9 887,667 + HP15_866 0.48 +2.9 887,776 - HP15_866 0.74 +0.2 887,862 + -0.6 887,921 - -0.7 887,988 + HP15_867 0.19 -1.9 887,994 + HP15_867 0.21 +1.4 888,214 + HP15_867 0.83 -0.9 888,237 + HP15_867 0.89 +0.2 888,338 + -1.4 888,355 - +2.0 888,402 - HP15_868 0.12 -0.6 888,402 - HP15_868 0.12 -0.0 888,473 + HP15_868 0.20 -0.8 888,481 - HP15_868 0.21 -1.1 888,685 - HP15_868 0.44 -0.5 888,732 + HP15_868 0.49 +0.2 888,732 + HP15_868 0.49 -0.6 888,732 + HP15_868 0.49 -0.8
Or see this region's nucleotide sequence