Strain Fitness in Marinobacter adhaerens HP15 around HP15_840

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_838 and HP15_839 overlap by 11 nucleotidesHP15_839 and HP15_840 are separated by 68 nucleotidesHP15_840 and HP15_841 are separated by 102 nucleotidesHP15_841 and HP15_842 are separated by 284 nucleotides HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051 _838 HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814 _839 HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685 _840 HP15_841: HP15_841 - YaiI/YqxD-like protein, at 860,788 to 861,240 _841 HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097 _842 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2 3at 857.908 kb on - strand, within HP15_838at 857.940 kb on + strand, within HP15_838at 857.948 kb on - strand, within HP15_838at 858.208 kb on + strand, within HP15_839at 858.235 kb on + strand, within HP15_839at 858.271 kb on + strand, within HP15_839at 858.279 kb on + strand, within HP15_839at 858.279 kb on - strand, within HP15_839at 858.300 kb on - strand, within HP15_839at 858.317 kb on - strand, within HP15_839at 858.339 kb on - strand, within HP15_839at 858.342 kb on + strand, within HP15_839at 858.403 kb on - strand, within HP15_839at 858.413 kb on - strand, within HP15_839at 858.426 kb on + strand, within HP15_839at 858.471 kb on - strand, within HP15_839at 858.669 kb on + strand, within HP15_839at 858.738 kb on - strandat 858.757 kb on - strandat 858.765 kb on - strandat 858.787 kb on + strandat 858.838 kb on - strandat 858.905 kb on - strandat 858.920 kb on - strandat 858.935 kb on + strandat 859.033 kb on - strandat 859.063 kb on - strandat 859.067 kb on - strand, within HP15_840at 859.077 kb on + strand, within HP15_840at 859.172 kb on - strand, within HP15_840at 859.214 kb on - strand, within HP15_840at 859.234 kb on + strand, within HP15_840at 859.241 kb on + strand, within HP15_840at 859.242 kb on - strand, within HP15_840at 859.242 kb on - strand, within HP15_840at 859.368 kb on - strand, within HP15_840at 859.469 kb on - strand, within HP15_840at 859.562 kb on - strand, within HP15_840at 859.619 kb on - strand, within HP15_840at 859.773 kb on + strand, within HP15_840at 859.781 kb on - strand, within HP15_840at 859.781 kb on - strand, within HP15_840at 859.850 kb on - strand, within HP15_840at 859.929 kb on + strand, within HP15_840at 859.977 kb on + strand, within HP15_840at 859.990 kb on + strand, within HP15_840at 860.043 kb on - strand, within HP15_840at 860.063 kb on + strand, within HP15_840at 860.081 kb on + strand, within HP15_840at 860.118 kb on + strand, within HP15_840at 860.236 kb on + strand, within HP15_840at 860.247 kb on + strand, within HP15_840at 860.520 kb on + strandat 860.689 kb on - strandat 860.853 kb on + strand, within HP15_841at 860.948 kb on + strand, within HP15_841at 861.019 kb on - strand, within HP15_841at 861.192 kb on - strand, within HP15_841at 861.192 kb on - strand, within HP15_841at 861.199 kb on + strandat 861.276 kb on - strandat 861.361 kb on - strandat 861.614 kb on - strand, within HP15_842at 861.636 kb on + strand, within HP15_842at 861.636 kb on + strand, within HP15_842at 861.654 kb on + strand, within HP15_842

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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857,908 - HP15_838 0.85 +0.9
857,940 + HP15_838 0.88 +1.8
857,948 - HP15_838 0.89 +2.9
858,208 + HP15_839 0.22 +2.3
858,235 + HP15_839 0.25 -0.4
858,271 + HP15_839 0.30 -0.4
858,279 + HP15_839 0.31 -0.8
858,279 - HP15_839 0.31 -1.0
858,300 - HP15_839 0.33 -0.8
858,317 - HP15_839 0.36 +1.8
858,339 - HP15_839 0.39 +1.8
858,342 + HP15_839 0.39 -0.3
858,403 - HP15_839 0.47 -0.5
858,413 - HP15_839 0.48 +1.4
858,426 + HP15_839 0.50 +0.6
858,471 - HP15_839 0.56 -1.8
858,669 + HP15_839 0.81 +1.7
858,738 - +2.0
858,757 - +0.9
858,765 - -0.2
858,787 + +1.4
858,838 - -0.2
858,905 - -0.5
858,920 - +0.6
858,935 + +1.0
859,033 - +1.7
859,063 - +1.9
859,067 - HP15_840 0.10 +1.0
859,077 + HP15_840 0.11 -1.1
859,172 - HP15_840 0.16 +2.4
859,214 - HP15_840 0.18 -1.4
859,234 + HP15_840 0.19 +1.5
859,241 + HP15_840 0.20 +0.2
859,242 - HP15_840 0.20 -0.0
859,242 - HP15_840 0.20 -0.2
859,368 - HP15_840 0.27 -0.3
859,469 - HP15_840 0.33 +0.2
859,562 - HP15_840 0.38 +0.1
859,619 - HP15_840 0.41 -0.1
859,773 + HP15_840 0.49 +0.8
859,781 - HP15_840 0.50 -0.3
859,781 - HP15_840 0.50 +0.1
859,850 - HP15_840 0.54 -0.2
859,929 + HP15_840 0.58 -0.7
859,977 + HP15_840 0.61 -0.6
859,990 + HP15_840 0.61 +1.4
860,043 - HP15_840 0.64 -1.1
860,063 + HP15_840 0.65 +1.7
860,081 + HP15_840 0.66 -0.3
860,118 + HP15_840 0.68 +0.9
860,236 + HP15_840 0.75 -0.3
860,247 + HP15_840 0.76 +2.9
860,520 + +2.0
860,689 - +0.3
860,853 + HP15_841 0.14 -0.8
860,948 + HP15_841 0.35 +0.3
861,019 - HP15_841 0.51 +0.4
861,192 - HP15_841 0.89 +2.0
861,192 - HP15_841 0.89 -1.0
861,199 + +2.1
861,276 - -0.7
861,361 - -2.2
861,614 - HP15_842 0.16 -0.6
861,636 + HP15_842 0.19 -0.5
861,636 + HP15_842 0.19 -0.1
861,654 + HP15_842 0.23 -1.4

Or see this region's nucleotide sequence