Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_751 and HP15_752 are separated by 10 nucleotides HP15_752 and HP15_753 are separated by 5 nucleotides HP15_753 and HP15_754 are separated by 195 nucleotides HP15_754 and HP15_755 are separated by 157 nucleotides
HP15_751: HP15_751 - monothiol glutaredoxin, at 760,856 to 761,188
_751
HP15_752: HP15_752 - protein containing TonB, C-terminal domain, at 761,199 to 761,951
_752
HP15_753: HP15_753 - protein containing DUF1631, at 761,957 to 764,188
_753
HP15_754: HP15_754 - membrane protein containing DUF1282, at 764,384 to 764,986
_754
HP15_755: HP15_755 - Mg2+ and Co2+ transporter CorB, at 765,144 to 766,430
_755
Position (kb) 761
762
763
764
765 Strain fitness (log2 ratio) -1
0
1
2 at 761.176 kb on + strand at 761.205 kb on - strand at 761.231 kb on + strand at 761.363 kb on - strand, within HP15_752 at 761.418 kb on + strand, within HP15_752 at 761.480 kb on + strand, within HP15_752 at 761.488 kb on - strand, within HP15_752 at 761.586 kb on - strand, within HP15_752 at 761.722 kb on - strand, within HP15_752 at 761.748 kb on - strand, within HP15_752 at 761.748 kb on - strand, within HP15_752 at 761.748 kb on - strand, within HP15_752 at 761.789 kb on - strand, within HP15_752 at 761.836 kb on + strand, within HP15_752 at 761.869 kb on - strand, within HP15_752 at 761.900 kb on + strand at 761.964 kb on + strand at 762.264 kb on + strand, within HP15_753 at 762.264 kb on + strand at 762.355 kb on - strand, within HP15_753 at 762.444 kb on - strand, within HP15_753 at 762.701 kb on - strand, within HP15_753 at 762.878 kb on - strand, within HP15_753 at 763.039 kb on - strand, within HP15_753 at 763.053 kb on - strand, within HP15_753 at 763.226 kb on + strand, within HP15_753 at 763.309 kb on - strand, within HP15_753 at 763.330 kb on + strand, within HP15_753 at 763.501 kb on + strand, within HP15_753 at 763.724 kb on - strand, within HP15_753 at 763.778 kb on - strand, within HP15_753 at 763.793 kb on + strand, within HP15_753 at 763.818 kb on - strand, within HP15_753 at 763.834 kb on + strand, within HP15_753 at 763.834 kb on + strand, within HP15_753 at 763.842 kb on - strand, within HP15_753 at 764.332 kb on + strand at 764.332 kb on + strand at 764.346 kb on + strand at 764.459 kb on - strand, within HP15_754 at 764.543 kb on - strand, within HP15_754 at 764.857 kb on + strand, within HP15_754 at 764.900 kb on - strand, within HP15_754 at 764.908 kb on - strand, within HP15_754 at 764.962 kb on + strand at 764.970 kb on - strand at 765.024 kb on + strand at 765.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 761,176 + -1.2 761,205 - +2.0 761,231 + +2.2 761,363 - HP15_752 0.22 +0.3 761,418 + HP15_752 0.29 -0.5 761,480 + HP15_752 0.37 -0.8 761,488 - HP15_752 0.38 +1.0 761,586 - HP15_752 0.51 +0.4 761,722 - HP15_752 0.69 +0.1 761,748 - HP15_752 0.73 +0.1 761,748 - HP15_752 0.73 -0.9 761,748 - HP15_752 0.73 -0.8 761,789 - HP15_752 0.78 +0.1 761,836 + HP15_752 0.85 -0.6 761,869 - HP15_752 0.89 +0.7 761,900 + +2.6 761,964 + +1.3 762,264 + HP15_753 0.14 -0.1 762,264 + -0.9 762,355 - HP15_753 0.18 -1.7 762,444 - HP15_753 0.22 -0.7 762,701 - HP15_753 0.33 -0.7 762,878 - HP15_753 0.41 -0.2 763,039 - HP15_753 0.48 +0.9 763,053 - HP15_753 0.49 -0.6 763,226 + HP15_753 0.57 +1.4 763,309 - HP15_753 0.61 -0.9 763,330 + HP15_753 0.62 -0.1 763,501 + HP15_753 0.69 -0.6 763,724 - HP15_753 0.79 -0.6 763,778 - HP15_753 0.82 -0.7 763,793 + HP15_753 0.82 -0.2 763,818 - HP15_753 0.83 -0.1 763,834 + HP15_753 0.84 +1.0 763,834 + HP15_753 0.84 -0.8 763,842 - HP15_753 0.84 +1.1 764,332 + -0.8 764,332 + +1.6 764,346 + +2.2 764,459 - HP15_754 0.12 -0.5 764,543 - HP15_754 0.26 -1.0 764,857 + HP15_754 0.78 -0.6 764,900 - HP15_754 0.86 +1.8 764,908 - HP15_754 0.87 +0.8 764,962 + +1.9 764,970 - +0.1 765,024 + +2.5 765,051 + +1.4
Or see this region's nucleotide sequence