Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides HP15_739 and HP15_740 are separated by 114 nucleotides
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
HP15_740: HP15_740 - oxidoreductase Tas, aldo/keto reductase family protein, at 748,305 to 749,342
_740
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739 at 747.558 kb on - strand, within HP15_739 at 747.595 kb on - strand, within HP15_739 at 747.611 kb on - strand, within HP15_739 at 747.913 kb on + strand, within HP15_739 at 747.931 kb on - strand, within HP15_739 at 748.009 kb on - strand, within HP15_739 at 748.029 kb on + strand, within HP15_739 at 748.051 kb on - strand, within HP15_739 at 748.051 kb on - strand, within HP15_739 at 748.099 kb on - strand at 748.201 kb on - strand at 748.214 kb on - strand at 748.339 kb on + strand at 748.385 kb on - strand at 748.385 kb on - strand at 748.399 kb on + strand at 748.420 kb on - strand, within HP15_740 at 748.439 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.465 kb on - strand, within HP15_740 at 748.486 kb on + strand, within HP15_740 at 748.497 kb on + strand, within HP15_740 at 748.661 kb on + strand, within HP15_740 at 748.666 kb on + strand, within HP15_740 at 748.699 kb on + strand, within HP15_740 at 748.980 kb on - strand, within HP15_740 at 749.073 kb on - strand, within HP15_740 at 749.121 kb on + strand, within HP15_740
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 745,986 + HP15_737 0.55 +1.9 745,994 - HP15_737 0.56 +1.8 746,051 + HP15_737 0.62 +2.0 746,051 + HP15_737 0.62 +1.1 746,088 - HP15_737 0.65 +1.2 746,141 - HP15_737 0.70 +0.3 746,189 - HP15_737 0.75 +0.7 746,189 - HP15_737 0.75 -0.6 746,293 + HP15_737 0.84 -0.5 746,294 - HP15_737 0.84 +2.0 746,404 - -0.7 746,461 + +1.6 746,471 + -0.3 746,497 - HP15_738 0.12 +1.2 746,504 - HP15_738 0.14 -0.3 746,717 + HP15_738 0.78 +1.8 746,774 - -0.9 746,795 - +0.1 746,797 + -0.2 746,907 + -0.3 746,912 + -0.6 746,976 - -1.1 747,097 - HP15_739 0.10 -1.4 747,101 + HP15_739 0.11 +0.1 747,168 - HP15_739 0.16 +0.3 747,170 + HP15_739 0.16 -0.1 747,182 + HP15_739 0.17 -1.0 747,204 + HP15_739 0.19 -1.2 747,238 - HP15_739 0.22 +0.2 747,558 - HP15_739 0.48 +1.6 747,595 - HP15_739 0.51 +0.5 747,611 - HP15_739 0.52 +0.7 747,913 + HP15_739 0.77 +1.9 747,931 - HP15_739 0.79 -2.6 748,009 - HP15_739 0.85 -0.7 748,029 + HP15_739 0.87 +0.3 748,051 - HP15_739 0.89 +0.5 748,051 - HP15_739 0.89 -2.2 748,099 - -1.7 748,201 - +0.4 748,214 - +0.7 748,339 + -0.3 748,385 - +1.7 748,385 - -0.4 748,399 + +1.9 748,420 - HP15_740 0.11 -0.4 748,439 - HP15_740 0.13 +3.5 748,465 - HP15_740 0.15 -1.2 748,465 - HP15_740 0.15 -1.7 748,465 - HP15_740 0.15 -0.6 748,486 + HP15_740 0.17 -0.8 748,497 + HP15_740 0.18 +0.6 748,661 + HP15_740 0.34 -0.4 748,666 + HP15_740 0.35 +1.8 748,699 + HP15_740 0.38 -0.2 748,980 - HP15_740 0.65 +0.2 749,073 - HP15_740 0.74 -2.0 749,121 + HP15_740 0.79 +2.1
Or see this region's nucleotide sequence