Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_697 and HP15_698 overlap by 1 nucleotides HP15_698 and HP15_699 are separated by 59 nucleotides HP15_699 and HP15_700 are separated by 2 nucleotides HP15_700 and HP15_701 overlap by 4 nucleotides HP15_701 and HP15_702 are separated by 273 nucleotides
HP15_697: HP15_697 - conserved hypothetical protein, at 707,871 to 708,542
_697
HP15_698: HP15_698 - conserved hypothetical protein, at 708,542 to 708,838
_698
HP15_699: HP15_699 - conserved hypothetical protein, at 708,898 to 710,031
_699
HP15_700: HP15_700 - hypothetical protein, at 710,034 to 710,192
_700
HP15_701: HP15_701 - hypothetical protein, at 710,189 to 710,449
_701
HP15_702: HP15_702 - conserved hypothetical protein, at 710,723 to 711,118
_702
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 707.979 kb on - strand, within HP15_697 at 708.037 kb on - strand, within HP15_697 at 708.116 kb on - strand, within HP15_697 at 708.165 kb on + strand, within HP15_697 at 708.241 kb on + strand, within HP15_697 at 708.402 kb on - strand, within HP15_697 at 708.434 kb on - strand, within HP15_697 at 708.489 kb on - strand at 708.825 kb on - strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.827 kb on + strand at 708.835 kb on - strand at 708.835 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.947 kb on - strand at 708.949 kb on + strand at 709.085 kb on + strand, within HP15_699 at 709.170 kb on + strand, within HP15_699 at 709.197 kb on + strand, within HP15_699 at 709.205 kb on - strand, within HP15_699 at 709.409 kb on - strand, within HP15_699 at 709.495 kb on - strand, within HP15_699 at 709.505 kb on + strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.513 kb on - strand, within HP15_699 at 709.520 kb on + strand, within HP15_699 at 709.590 kb on + strand, within HP15_699 at 709.636 kb on - strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.639 kb on + strand, within HP15_699 at 709.663 kb on + strand, within HP15_699 at 709.793 kb on - strand, within HP15_699 at 709.858 kb on + strand, within HP15_699 at 709.866 kb on - strand, within HP15_699 at 709.895 kb on - strand, within HP15_699 at 709.919 kb on - strand at 709.924 kb on - strand at 709.969 kb on + strand at 709.994 kb on - strand at 710.059 kb on + strand, within HP15_700 at 710.193 kb on + strand at 710.201 kb on - strand at 710.269 kb on - strand, within HP15_701 at 710.435 kb on - strand at 710.524 kb on + strand at 710.532 kb on - strand at 710.753 kb on - strand at 710.755 kb on + strand at 710.939 kb on - strand, within HP15_702 at 710.949 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.980 kb on + strand, within HP15_702 at 710.995 kb on - strand, within HP15_702 at 711.019 kb on - strand, within HP15_702
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 707,979 - HP15_697 0.16 +0.4 708,037 - HP15_697 0.25 -0.5 708,116 - HP15_697 0.36 +0.2 708,165 + HP15_697 0.44 -1.5 708,241 + HP15_697 0.55 -4.1 708,402 - HP15_697 0.79 +1.9 708,434 - HP15_697 0.84 +1.9 708,489 - +1.9 708,825 - -0.0 708,827 + -2.0 708,827 + -2.3 708,827 + -1.7 708,835 - +1.7 708,835 - +1.8 708,947 - -0.3 708,947 - +1.8 708,947 - +2.1 708,949 + +0.7 709,085 + HP15_699 0.16 -1.0 709,170 + HP15_699 0.24 +0.4 709,197 + HP15_699 0.26 -1.3 709,205 - HP15_699 0.27 +0.2 709,409 - HP15_699 0.45 +0.0 709,495 - HP15_699 0.53 -1.0 709,505 + HP15_699 0.54 -2.7 709,513 - HP15_699 0.54 -1.6 709,513 - HP15_699 0.54 -1.6 709,520 + HP15_699 0.55 -2.6 709,590 + HP15_699 0.61 -1.5 709,636 - HP15_699 0.65 -0.5 709,639 + HP15_699 0.65 +0.4 709,639 + HP15_699 0.65 -1.3 709,663 + HP15_699 0.67 -1.9 709,793 - HP15_699 0.79 -0.6 709,858 + HP15_699 0.85 -4.3 709,866 - HP15_699 0.85 -0.1 709,895 - HP15_699 0.88 -1.0 709,919 - -0.3 709,924 - -2.8 709,969 + -3.4 709,994 - +0.0 710,059 + HP15_700 0.16 +0.9 710,193 + -3.7 710,201 - +0.6 710,269 - HP15_701 0.31 +2.0 710,435 - -0.5 710,524 + -0.7 710,532 - -1.3 710,753 - -0.5 710,755 + -2.0 710,939 - HP15_702 0.55 -0.7 710,949 - HP15_702 0.57 +2.1 710,956 - HP15_702 0.59 -0.5 710,956 - HP15_702 0.59 +0.2 710,980 + HP15_702 0.65 -2.7 710,995 - HP15_702 0.69 -1.7 711,019 - HP15_702 0.75 +1.8
Or see this region's nucleotide sequence