Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_682 and HP15_683 overlap by 4 nucleotides HP15_683 and HP15_684 are separated by 23 nucleotides HP15_684 and HP15_tRNA13 are separated by 290 nucleotides
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
HP15_682: HP15_682 - replication protein O, at 698,393 to 699,406
_682
HP15_683: HP15_683 - conserved hypothetical protein, at 699,403 to 700,191
_683
HP15_684: HP15_684 - hypothetical protein, at 700,215 to 700,508
_684
HP15_tRNA13: HP15_tRNA13 - tRNA-Met, at 700,799 to 700,874
_tRNA13
Position (kb) 699
700
701 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 698.405 kb on + strand at 698.406 kb on - strand at 698.497 kb on + strand, within HP15_682 at 698.523 kb on - strand, within HP15_682 at 698.573 kb on + strand, within HP15_682 at 698.612 kb on + strand, within HP15_682 at 698.620 kb on + strand, within HP15_682 at 698.675 kb on + strand, within HP15_682 at 698.690 kb on - strand, within HP15_682 at 698.774 kb on + strand, within HP15_682 at 698.803 kb on + strand, within HP15_682 at 698.808 kb on + strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.891 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.917 kb on + strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.242 kb on - strand, within HP15_682 at 699.352 kb on - strand at 699.719 kb on + strand, within HP15_683 at 699.752 kb on + strand, within HP15_683 at 699.752 kb on + strand, within HP15_683 at 699.760 kb on - strand, within HP15_683 at 699.827 kb on + strand, within HP15_683 at 699.875 kb on - strand, within HP15_683 at 699.878 kb on + strand, within HP15_683 at 699.921 kb on - strand, within HP15_683 at 700.116 kb on + strand at 700.121 kb on + strand at 700.174 kb on + strand at 700.227 kb on + strand at 700.290 kb on + strand, within HP15_684 at 700.354 kb on + strand, within HP15_684 at 700.424 kb on + strand, within HP15_684 at 700.529 kb on + strand at 700.690 kb on + strand at 700.690 kb on + strand at 700.690 kb on + strand at 700.949 kb on + strand at 700.995 kb on + strand at 700.997 kb on + strand at 701.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 698,405 + +1.7 698,406 - -2.7 698,497 + HP15_682 0.10 +1.8 698,523 - HP15_682 0.13 +3.5 698,573 + HP15_682 0.18 -0.6 698,612 + HP15_682 0.22 +2.2 698,620 + HP15_682 0.22 +0.1 698,675 + HP15_682 0.28 -0.9 698,690 - HP15_682 0.29 -1.3 698,774 + HP15_682 0.38 +0.9 698,803 + HP15_682 0.40 -0.4 698,808 + HP15_682 0.41 -0.6 698,816 - HP15_682 0.42 -0.8 698,816 - HP15_682 0.42 -1.6 698,848 - HP15_682 0.45 +0.8 698,848 - HP15_682 0.45 -0.4 698,891 - HP15_682 0.49 +0.0 698,915 - HP15_682 0.51 +1.5 698,915 - HP15_682 0.51 -1.1 698,917 + HP15_682 0.52 +0.1 699,125 - HP15_682 0.72 +1.9 699,125 - HP15_682 0.72 +1.5 699,242 - HP15_682 0.84 -1.3 699,352 - +0.2 699,719 + HP15_683 0.40 -0.3 699,752 + HP15_683 0.44 -0.5 699,752 + HP15_683 0.44 -0.4 699,760 - HP15_683 0.45 +0.9 699,827 + HP15_683 0.54 -1.3 699,875 - HP15_683 0.60 -2.5 699,878 + HP15_683 0.60 +1.5 699,921 - HP15_683 0.66 -4.1 700,116 + +0.7 700,121 + -2.7 700,174 + -0.6 700,227 + +1.7 700,290 + HP15_684 0.26 -0.6 700,354 + HP15_684 0.47 +0.5 700,424 + HP15_684 0.71 -1.9 700,529 + -0.4 700,690 + -0.4 700,690 + +1.6 700,690 + -1.0 700,949 + -1.1 700,995 + -1.2 700,997 + -0.3 701,005 + +0.2
Or see this region's nucleotide sequence