Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_648 and HP15_649 overlap by 10 nucleotides HP15_649 and HP15_650 overlap by 11 nucleotides HP15_650 and HP15_651 overlap by 1 nucleotides
HP15_648: HP15_648 - phage late control D, at 671,089 to 672,087
_648
HP15_649: HP15_649 - phage tail protein X, at 672,078 to 672,290
_649
HP15_650: HP15_650 - phage P2 GpU, at 672,280 to 672,672
_650
HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426
_651
Position (kb) 672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 671.326 kb on - strand, within HP15_648 at 671.372 kb on + strand, within HP15_648 at 671.374 kb on - strand, within HP15_648 at 671.518 kb on - strand, within HP15_648 at 671.580 kb on + strand, within HP15_648 at 671.588 kb on - strand, within HP15_648 at 671.590 kb on + strand, within HP15_648 at 671.598 kb on - strand, within HP15_648 at 671.652 kb on + strand, within HP15_648 at 671.683 kb on - strand, within HP15_648 at 671.685 kb on - strand, within HP15_648 at 671.764 kb on + strand, within HP15_648 at 671.811 kb on + strand, within HP15_648 at 671.850 kb on + strand, within HP15_648 at 671.917 kb on - strand, within HP15_648 at 671.981 kb on - strand, within HP15_648 at 672.097 kb on - strand at 672.122 kb on - strand, within HP15_649 at 672.163 kb on - strand, within HP15_649 at 672.242 kb on - strand, within HP15_649 at 672.357 kb on - strand, within HP15_650 at 672.392 kb on - strand, within HP15_650 at 672.416 kb on + strand, within HP15_650 at 672.416 kb on + strand, within HP15_650 at 672.458 kb on + strand, within HP15_650 at 672.458 kb on + strand, within HP15_650 at 672.466 kb on - strand, within HP15_650 at 672.546 kb on - strand, within HP15_650 at 672.553 kb on + strand, within HP15_650 at 672.558 kb on + strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.561 kb on - strand, within HP15_650 at 672.576 kb on + strand, within HP15_650 at 672.581 kb on - strand, within HP15_650 at 672.610 kb on + strand, within HP15_650 at 672.701 kb on + strand at 672.793 kb on + strand at 672.860 kb on - strand, within HP15_651 at 672.877 kb on - strand, within HP15_651 at 673.049 kb on - strand, within HP15_651 at 673.139 kb on - strand, within HP15_651 at 673.222 kb on + strand, within HP15_651 at 673.335 kb on + strand, within HP15_651 at 673.335 kb on + strand, within HP15_651 at 673.520 kb on + strand, within HP15_651 at 673.543 kb on - strand, within HP15_651 at 673.601 kb on + strand, within HP15_651 at 673.621 kb on - strand, within HP15_651 at 673.651 kb on + strand, within HP15_651 at 673.651 kb on + strand, within HP15_651
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 671,326 - HP15_648 0.24 +1.8 671,372 + HP15_648 0.28 +0.7 671,374 - HP15_648 0.29 -0.3 671,518 - HP15_648 0.43 +2.2 671,580 + HP15_648 0.49 -2.7 671,588 - HP15_648 0.50 +2.3 671,590 + HP15_648 0.50 -1.6 671,598 - HP15_648 0.51 +0.3 671,652 + HP15_648 0.56 +0.1 671,683 - HP15_648 0.59 -1.0 671,685 - HP15_648 0.60 +1.7 671,764 + HP15_648 0.68 +2.4 671,811 + HP15_648 0.72 +2.3 671,850 + HP15_648 0.76 +0.0 671,917 - HP15_648 0.83 -0.6 671,981 - HP15_648 0.89 +1.9 672,097 - -0.6 672,122 - HP15_649 0.21 +2.2 672,163 - HP15_649 0.40 +1.2 672,242 - HP15_649 0.77 -0.3 672,357 - HP15_650 0.20 +0.9 672,392 - HP15_650 0.28 -0.3 672,416 + HP15_650 0.35 -3.0 672,416 + HP15_650 0.35 -0.8 672,458 + HP15_650 0.45 +2.2 672,458 + HP15_650 0.45 -1.1 672,466 - HP15_650 0.47 +0.7 672,546 - HP15_650 0.68 -1.2 672,553 + HP15_650 0.69 -0.1 672,558 + HP15_650 0.71 +2.0 672,561 - HP15_650 0.72 +2.1 672,561 - HP15_650 0.72 +0.1 672,561 - HP15_650 0.72 +1.9 672,576 + HP15_650 0.75 +1.0 672,581 - HP15_650 0.77 -0.6 672,610 + HP15_650 0.84 +2.8 672,701 + +0.2 672,793 + -0.5 672,860 - HP15_651 0.11 -0.2 672,877 - HP15_651 0.12 -0.8 673,049 - HP15_651 0.21 +2.1 673,139 - HP15_651 0.27 -2.4 673,222 + HP15_651 0.31 -0.4 673,335 + HP15_651 0.38 +0.0 673,335 + HP15_651 0.38 -0.1 673,520 + HP15_651 0.48 +1.3 673,543 - HP15_651 0.50 -2.0 673,601 + HP15_651 0.53 +2.1 673,621 - HP15_651 0.54 -0.3 673,651 + HP15_651 0.56 -0.3 673,651 + HP15_651 0.56 -0.2
Or see this region's nucleotide sequence