Strain Fitness in Marinobacter adhaerens HP15 around HP15_599

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_598 and HP15_599 overlap by 4 nucleotidesHP15_599 and HP15_600 overlap by 4 nucleotides HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930 _598 HP15_599: HP15_599 - membrane protein containing Diguanylate cyclase, predicted domains, at 619,927 to 620,925 _599 HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938 _600 Position (kb) 619 620 621Strain fitness (log2 ratio) -2 -1 0 1 2 3at 619.000 kb on - strand, within HP15_598at 619.159 kb on - strand, within HP15_598at 619.159 kb on - strand, within HP15_598at 619.181 kb on - strand, within HP15_598at 619.181 kb on - strand, within HP15_598at 619.191 kb on - strand, within HP15_598at 619.282 kb on + strand, within HP15_598at 619.283 kb on - strand, within HP15_598at 619.352 kb on - strand, within HP15_598at 619.431 kb on - strand, within HP15_598at 619.431 kb on - strand, within HP15_598at 619.451 kb on + strand, within HP15_598at 619.514 kb on + strand, within HP15_598at 619.731 kb on + strand, within HP15_598at 619.731 kb on + strand, within HP15_598at 619.813 kb on - strandat 619.828 kb on - strandat 619.856 kb on + strandat 619.950 kb on + strandat 620.025 kb on + strandat 620.039 kb on + strand, within HP15_599at 620.195 kb on + strand, within HP15_599at 620.202 kb on + strand, within HP15_599at 620.210 kb on - strand, within HP15_599at 620.210 kb on - strand, within HP15_599at 620.233 kb on - strand, within HP15_599at 620.254 kb on - strand, within HP15_599at 620.254 kb on - strand, within HP15_599at 620.340 kb on - strand, within HP15_599at 620.343 kb on - strand, within HP15_599at 620.436 kb on + strand, within HP15_599at 620.602 kb on - strand, within HP15_599at 620.701 kb on - strand, within HP15_599at 620.706 kb on - strand, within HP15_599at 620.732 kb on + strand, within HP15_599at 620.881 kb on - strandat 620.895 kb on + strandat 620.896 kb on + strandat 620.935 kb on - strandat 620.951 kb on + strandat 620.980 kb on + strandat 621.006 kb on + strandat 621.011 kb on + strandat 621.029 kb on - strand, within HP15_600at 621.222 kb on - strand, within HP15_600at 621.323 kb on - strand, within HP15_600at 621.371 kb on - strand, within HP15_600at 621.556 kb on - strand, within HP15_600at 621.646 kb on + strand, within HP15_600at 621.646 kb on + strand, within HP15_600at 621.681 kb on + strand, within HP15_600at 621.831 kb on + strand, within HP15_600at 621.839 kb on - strandat 621.853 kb on + strandat 621.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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619,000 - HP15_598 0.36 +3.3
619,159 - HP15_598 0.47 -0.2
619,159 - HP15_598 0.47 +0.3
619,181 - HP15_598 0.49 -0.1
619,181 - HP15_598 0.49 -1.0
619,191 - HP15_598 0.49 -1.2
619,282 + HP15_598 0.55 +2.0
619,283 - HP15_598 0.56 +2.5
619,352 - HP15_598 0.60 +0.2
619,431 - HP15_598 0.66 +1.8
619,431 - HP15_598 0.66 +2.4
619,451 + HP15_598 0.67 +0.3
619,514 + HP15_598 0.71 +1.8
619,731 + HP15_598 0.86 +2.2
619,731 + HP15_598 0.86 +0.1
619,813 - -0.4
619,828 - -0.5
619,856 + -0.7
619,950 + +1.3
620,025 + +1.7
620,039 + HP15_599 0.11 +0.4
620,195 + HP15_599 0.27 +1.5
620,202 + HP15_599 0.28 +2.0
620,210 - HP15_599 0.28 +0.9
620,210 - HP15_599 0.28 +2.0
620,233 - HP15_599 0.31 +1.7
620,254 - HP15_599 0.33 +1.8
620,254 - HP15_599 0.33 +1.9
620,340 - HP15_599 0.41 +1.9
620,343 - HP15_599 0.42 +1.8
620,436 + HP15_599 0.51 -0.3
620,602 - HP15_599 0.68 +1.4
620,701 - HP15_599 0.77 +1.5
620,706 - HP15_599 0.78 +2.5
620,732 + HP15_599 0.81 +1.5
620,881 - +1.8
620,895 + +1.7
620,896 + +1.8
620,935 - +0.8
620,951 + +1.9
620,980 + +2.6
621,006 + +0.6
621,011 + +1.1
621,029 - HP15_600 0.11 +0.6
621,222 - HP15_600 0.29 +1.3
621,323 - HP15_600 0.39 +0.8
621,371 - HP15_600 0.44 +1.0
621,556 - HP15_600 0.62 +1.9
621,646 + HP15_600 0.71 +1.4
621,646 + HP15_600 0.71 +1.8
621,681 + HP15_600 0.75 +1.3
621,831 + HP15_600 0.89 +1.7
621,839 - -2.4
621,853 + +0.5
621,861 - +2.5

Or see this region's nucleotide sequence