Strain Fitness in Marinobacter adhaerens HP15 around HP15_61

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_59 and HP15_60 are separated by 13 nucleotidesHP15_60 and HP15_61 are separated by 22 nucleotidesHP15_61 and HP15_62 are separated by 41 nucleotidesHP15_62 and HP15_63 are separated by 63 nucleotides HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906 _59 HP15_60: HP15_60 - transcription regulator, AsnC-type, at 64,920 to 65,507 _60 HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 HP15_62: HP15_62 - hypothetical protein, at 66,801 to 66,905 _62 HP15_63: HP15_63 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 66,969 to 67,775 _63 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.564 kb on - strand, within HP15_59at 64.584 kb on - strand, within HP15_59at 64.623 kb on - strand, within HP15_59at 64.627 kb on - strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.795 kb on + strand, within HP15_59at 64.803 kb on - strand, within HP15_59at 64.839 kb on - strandat 64.847 kb on - strandat 64.849 kb on + strandat 64.880 kb on + strandat 64.900 kb on + strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.986 kb on - strand, within HP15_60at 65.030 kb on + strand, within HP15_60at 65.036 kb on - strand, within HP15_60at 65.088 kb on + strand, within HP15_60at 65.118 kb on - strand, within HP15_60at 65.278 kb on + strand, within HP15_60at 65.286 kb on - strand, within HP15_60at 65.288 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.339 kb on - strand, within HP15_60at 65.561 kb on + strandat 65.647 kb on - strandat 65.687 kb on - strand, within HP15_61at 65.760 kb on + strand, within HP15_61at 65.767 kb on + strand, within HP15_61at 65.876 kb on - strand, within HP15_61at 65.896 kb on - strand, within HP15_61at 65.898 kb on + strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.942 kb on + strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.954 kb on + strand, within HP15_61at 66.025 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.161 kb on - strand, within HP15_61at 66.192 kb on - strand, within HP15_61at 66.199 kb on + strand, within HP15_61at 66.224 kb on - strand, within HP15_61at 66.225 kb on - strand, within HP15_61at 66.230 kb on + strand, within HP15_61at 66.283 kb on - strand, within HP15_61at 66.447 kb on + strand, within HP15_61at 66.472 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.514 kb on - strand, within HP15_61at 66.520 kb on + strand, within HP15_61at 66.521 kb on - strand, within HP15_61at 66.561 kb on - strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.563 kb on + strand, within HP15_61at 66.620 kb on - strand, within HP15_61at 66.642 kb on + strandat 66.659 kb on + strandat 66.677 kb on - strandat 66.736 kb on - strandat 66.788 kb on + strandat 66.799 kb on - strandat 66.839 kb on - strand, within HP15_62at 66.844 kb on + strand, within HP15_62at 66.919 kb on + strandat 66.927 kb on - strandat 66.958 kb on - strandat 66.984 kb on - strandat 66.984 kb on - strandat 67.022 kb on - strandat 67.022 kb on - strandat 67.137 kb on + strand, within HP15_63at 67.186 kb on - strand, within HP15_63at 67.441 kb on + strand, within HP15_63at 67.441 kb on - strand, within HP15_63at 67.559 kb on - strand, within HP15_63at 67.570 kb on + strand, within HP15_63at 67.580 kb on + strand, within HP15_63at 67.604 kb on + strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.617 kb on - strand, within HP15_63at 67.689 kb on + strand, within HP15_63at 67.692 kb on - strand, within HP15_63

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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64,548 + HP15_59 0.52 -1.1
64,548 + HP15_59 0.52 -0.3
64,548 + HP15_59 0.52 -1.0
64,548 + HP15_59 0.52 +2.0
64,564 - HP15_59 0.54 -1.7
64,584 - HP15_59 0.57 -0.6
64,623 - HP15_59 0.62 +2.0
64,627 - HP15_59 0.63 -0.3
64,692 + HP15_59 0.71 -1.8
64,692 + HP15_59 0.71 +0.7
64,692 + HP15_59 0.71 -0.0
64,700 - HP15_59 0.72 -0.3
64,700 - HP15_59 0.72 +1.2
64,700 - HP15_59 0.72 -0.8
64,700 - HP15_59 0.72 +0.0
64,700 - HP15_59 0.72 -0.9
64,795 + HP15_59 0.85 +2.4
64,803 - HP15_59 0.86 +0.1
64,839 - -0.6
64,847 - -0.2
64,849 + -0.8
64,880 + -0.4
64,900 + +0.5
64,908 - +0.2
64,908 - -0.4
64,908 - +0.3
64,986 - HP15_60 0.11 +2.1
65,030 + HP15_60 0.19 -0.3
65,036 - HP15_60 0.20 +2.5
65,088 + HP15_60 0.29 -1.5
65,118 - HP15_60 0.34 -1.7
65,278 + HP15_60 0.61 -1.2
65,286 - HP15_60 0.62 +1.5
65,288 + HP15_60 0.63 +1.4
65,320 + HP15_60 0.68 +1.0
65,320 + HP15_60 0.68 -1.0
65,329 - HP15_60 0.70 -0.4
65,329 - HP15_60 0.70 -0.1
65,339 - HP15_60 0.71 +1.7
65,561 + +1.9
65,647 - +1.6
65,687 - HP15_61 0.13 -0.2
65,760 + HP15_61 0.19 +1.3
65,767 + HP15_61 0.19 -0.3
65,876 - HP15_61 0.28 +2.2
65,896 - HP15_61 0.30 -2.6
65,898 + HP15_61 0.30 +1.0
65,906 - HP15_61 0.31 -0.4
65,906 - HP15_61 0.31 +0.1
65,906 - HP15_61 0.31 -1.3
65,942 + HP15_61 0.33 +2.5
65,950 - HP15_61 0.34 -0.2
65,950 - HP15_61 0.34 +0.8
65,954 + HP15_61 0.34 +0.9
66,025 + HP15_61 0.40 +1.7
66,105 + HP15_61 0.47 +1.3
66,105 + HP15_61 0.47 +1.0
66,105 + HP15_61 0.47 +1.8
66,105 + HP15_61 0.47 -1.2
66,105 + HP15_61 0.47 -0.3
66,113 - HP15_61 0.47 -0.8
66,113 - HP15_61 0.47 +0.6
66,113 - HP15_61 0.47 -0.2
66,113 - HP15_61 0.47 -1.0
66,113 - HP15_61 0.47 +0.2
66,161 - HP15_61 0.51 +0.6
66,192 - HP15_61 0.54 -0.3
66,199 + HP15_61 0.54 -1.1
66,224 - HP15_61 0.56 +0.7
66,225 - HP15_61 0.57 +2.3
66,230 + HP15_61 0.57 -0.6
66,283 - HP15_61 0.61 -0.6
66,447 + HP15_61 0.75 -0.8
66,472 + HP15_61 0.77 +0.7
66,489 + HP15_61 0.78 +1.5
66,489 + HP15_61 0.78 -0.9
66,489 + HP15_61 0.78 -1.1
66,497 - HP15_61 0.79 -1.7
66,497 - HP15_61 0.79 +0.1
66,514 - HP15_61 0.80 -0.3
66,520 + HP15_61 0.80 -1.1
66,521 - HP15_61 0.81 +1.7
66,561 - HP15_61 0.84 -2.0
66,563 + HP15_61 0.84 +2.1
66,563 + HP15_61 0.84 +2.5
66,620 - HP15_61 0.89 +1.3
66,642 + -0.1
66,659 + -1.2
66,677 - +0.4
66,736 - +1.8
66,788 + -1.0
66,799 - -0.5
66,839 - HP15_62 0.36 -0.7
66,844 + HP15_62 0.41 -0.9
66,919 + +0.0
66,927 - -0.2
66,958 - -0.7
66,984 - +2.0
66,984 - -0.2
67,022 - -0.5
67,022 - -1.5
67,137 + HP15_63 0.21 +0.4
67,186 - HP15_63 0.27 -0.3
67,441 + HP15_63 0.58 -0.4
67,441 - HP15_63 0.58 +2.0
67,559 - HP15_63 0.73 +0.4
67,570 + HP15_63 0.74 -0.4
67,580 + HP15_63 0.76 +2.3
67,604 + HP15_63 0.79 -3.0
67,612 - HP15_63 0.80 -0.4
67,612 - HP15_63 0.80 +0.1
67,617 - HP15_63 0.80 +0.0
67,689 + HP15_63 0.89 +0.2
67,692 - HP15_63 0.90 -0.9

Or see this region's nucleotide sequence