Strain Fitness in Marinobacter adhaerens HP15 around HP15_60

Experiment: monoculture; Experiment B, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_58 and HP15_59 are separated by 91 nucleotidesHP15_59 and HP15_60 are separated by 13 nucleotidesHP15_60 and HP15_61 are separated by 22 nucleotides HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068 _58 HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906 _59 HP15_60: HP15_60 - transcription regulator, AsnC-type, at 64,920 to 65,507 _60 HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 63.933 kb on + strand, within HP15_58at 63.936 kb on - strand, within HP15_58at 63.985 kb on + strand, within HP15_58at 63.992 kb on + strand, within HP15_58at 63.993 kb on - strand, within HP15_58at 63.997 kb on + strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.005 kb on - strand, within HP15_58at 64.031 kb on - strandat 64.063 kb on + strandat 64.066 kb on - strandat 64.066 kb on - strandat 64.067 kb on + strandat 64.071 kb on - strandat 64.139 kb on + strandat 64.141 kb on + strandat 64.141 kb on + strandat 64.142 kb on - strandat 64.149 kb on - strandat 64.196 kb on + strandat 64.229 kb on - strandat 64.229 kb on - strandat 64.274 kb on + strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.307 kb on + strand, within HP15_59at 64.310 kb on - strand, within HP15_59at 64.351 kb on - strand, within HP15_59at 64.426 kb on + strand, within HP15_59at 64.463 kb on - strand, within HP15_59at 64.517 kb on + strand, within HP15_59at 64.525 kb on - strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.564 kb on - strand, within HP15_59at 64.584 kb on - strand, within HP15_59at 64.623 kb on - strand, within HP15_59at 64.627 kb on - strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.795 kb on + strand, within HP15_59at 64.803 kb on - strand, within HP15_59at 64.839 kb on - strandat 64.847 kb on - strandat 64.849 kb on + strandat 64.880 kb on + strandat 64.900 kb on + strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.986 kb on - strand, within HP15_60at 65.030 kb on + strand, within HP15_60at 65.036 kb on - strand, within HP15_60at 65.088 kb on + strand, within HP15_60at 65.118 kb on - strand, within HP15_60at 65.278 kb on + strand, within HP15_60at 65.286 kb on - strand, within HP15_60at 65.288 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.339 kb on - strand, within HP15_60at 65.561 kb on + strandat 65.647 kb on - strandat 65.687 kb on - strand, within HP15_61at 65.760 kb on + strand, within HP15_61at 65.767 kb on + strand, within HP15_61at 65.876 kb on - strand, within HP15_61at 65.896 kb on - strand, within HP15_61at 65.898 kb on + strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.942 kb on + strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.954 kb on + strand, within HP15_61at 66.025 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.161 kb on - strand, within HP15_61at 66.192 kb on - strand, within HP15_61at 66.199 kb on + strand, within HP15_61at 66.224 kb on - strand, within HP15_61at 66.225 kb on - strand, within HP15_61at 66.230 kb on + strand, within HP15_61at 66.283 kb on - strand, within HP15_61at 66.447 kb on + strand, within HP15_61at 66.472 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.497 kb on - strand, within HP15_61

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
remove
63,933 + HP15_58 0.78 +0.5
63,936 - HP15_58 0.79 +0.3
63,985 + HP15_58 0.87 +0.0
63,992 + HP15_58 0.88 -0.5
63,993 - HP15_58 0.88 -0.7
63,997 + HP15_58 0.89 -0.8
64,000 - HP15_58 0.89 -0.3
64,000 - HP15_58 0.89 -0.5
64,005 - HP15_58 0.90 -1.5
64,031 - -1.5
64,063 + -0.2
64,066 - +0.1
64,066 - +1.7
64,067 + -0.5
64,071 - -0.5
64,139 + +0.0
64,141 + -0.1
64,141 + -0.1
64,142 - -0.5
64,149 - -0.7
64,196 + +0.2
64,229 - -0.8
64,229 - -0.7
64,274 + HP15_59 0.15 +1.7
64,282 - HP15_59 0.16 +2.0
64,282 - HP15_59 0.16 -1.8
64,282 - HP15_59 0.16 +0.7
64,307 + HP15_59 0.20 +2.2
64,310 - HP15_59 0.20 +1.3
64,351 - HP15_59 0.26 -1.1
64,426 + HP15_59 0.36 -0.9
64,463 - HP15_59 0.41 +0.4
64,517 + HP15_59 0.48 -1.3
64,525 - HP15_59 0.49 -2.5
64,548 + HP15_59 0.52 -1.1
64,548 + HP15_59 0.52 -0.3
64,548 + HP15_59 0.52 -1.0
64,548 + HP15_59 0.52 +2.0
64,564 - HP15_59 0.54 -1.7
64,584 - HP15_59 0.57 -0.6
64,623 - HP15_59 0.62 +2.0
64,627 - HP15_59 0.63 -0.3
64,692 + HP15_59 0.71 -1.8
64,692 + HP15_59 0.71 +0.7
64,692 + HP15_59 0.71 -0.0
64,700 - HP15_59 0.72 -0.3
64,700 - HP15_59 0.72 +1.2
64,700 - HP15_59 0.72 -0.8
64,700 - HP15_59 0.72 +0.0
64,700 - HP15_59 0.72 -0.9
64,795 + HP15_59 0.85 +2.4
64,803 - HP15_59 0.86 +0.1
64,839 - -0.6
64,847 - -0.2
64,849 + -0.8
64,880 + -0.4
64,900 + +0.5
64,908 - +0.2
64,908 - -0.4
64,908 - +0.3
64,986 - HP15_60 0.11 +2.1
65,030 + HP15_60 0.19 -0.3
65,036 - HP15_60 0.20 +2.5
65,088 + HP15_60 0.29 -1.5
65,118 - HP15_60 0.34 -1.7
65,278 + HP15_60 0.61 -1.2
65,286 - HP15_60 0.62 +1.5
65,288 + HP15_60 0.63 +1.4
65,320 + HP15_60 0.68 +1.0
65,320 + HP15_60 0.68 -1.0
65,329 - HP15_60 0.70 -0.4
65,329 - HP15_60 0.70 -0.1
65,339 - HP15_60 0.71 +1.7
65,561 + +1.9
65,647 - +1.6
65,687 - HP15_61 0.13 -0.2
65,760 + HP15_61 0.19 +1.3
65,767 + HP15_61 0.19 -0.3
65,876 - HP15_61 0.28 +2.2
65,896 - HP15_61 0.30 -2.6
65,898 + HP15_61 0.30 +1.0
65,906 - HP15_61 0.31 -0.4
65,906 - HP15_61 0.31 +0.1
65,906 - HP15_61 0.31 -1.3
65,942 + HP15_61 0.33 +2.5
65,950 - HP15_61 0.34 -0.2
65,950 - HP15_61 0.34 +0.8
65,954 + HP15_61 0.34 +0.9
66,025 + HP15_61 0.40 +1.7
66,105 + HP15_61 0.47 +1.3
66,105 + HP15_61 0.47 +1.0
66,105 + HP15_61 0.47 +1.8
66,105 + HP15_61 0.47 -1.2
66,105 + HP15_61 0.47 -0.3
66,113 - HP15_61 0.47 -0.8
66,113 - HP15_61 0.47 +0.6
66,113 - HP15_61 0.47 -0.2
66,113 - HP15_61 0.47 -1.0
66,113 - HP15_61 0.47 +0.2
66,161 - HP15_61 0.51 +0.6
66,192 - HP15_61 0.54 -0.3
66,199 + HP15_61 0.54 -1.1
66,224 - HP15_61 0.56 +0.7
66,225 - HP15_61 0.57 +2.3
66,230 + HP15_61 0.57 -0.6
66,283 - HP15_61 0.61 -0.6
66,447 + HP15_61 0.75 -0.8
66,472 + HP15_61 0.77 +0.7
66,489 + HP15_61 0.78 +1.5
66,489 + HP15_61 0.78 -0.9
66,489 + HP15_61 0.78 -1.1
66,497 - HP15_61 0.79 -1.7
66,497 - HP15_61 0.79 +0.1

Or see this region's nucleotide sequence