Strain Fitness in Marinobacter adhaerens HP15 around HP15_496

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_494 and HP15_495 overlap by 1 nucleotidesHP15_495 and HP15_496 are separated by 3 nucleotidesHP15_496 and HP15_497 overlap by 4 nucleotidesHP15_497 and HP15_498 are separated by 17 nucleotidesHP15_498 and HP15_499 are separated by 138 nucleotides HP15_494: HP15_494 - 6,7-dimethyl-8-ribityllumazine synthase, at 509,442 to 509,918 _494 HP15_495: HP15_495 - transcription antitermination protein NusB, at 509,918 to 510,394 _495 HP15_496: HP15_496 - thiamine-monophosphate kinase, at 510,398 to 511,354 _496 HP15_497: HP15_497 - phosphatidylglycerophosphatase A, at 511,351 to 511,878 _497 HP15_498: HP15_498 - thiolase-like protein, at 511,896 to 512,099 _498 HP15_499: HP15_499 - hypothetical protein, at 512,238 to 512,348 _499 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 511.998 kb on - strand, within HP15_498at 512.000 kb on - strand, within HP15_498at 512.000 kb on - strand, within HP15_498at 512.028 kb on + strand, within HP15_498at 512.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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511,998 - HP15_498 0.50 -2.1
512,000 - HP15_498 0.51 -2.7
512,000 - HP15_498 0.51 -0.1
512,028 + HP15_498 0.65 +0.1
512,113 - +2.1

Or see this region's nucleotide sequence