Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g161 and HP15_p187g162 are separated by 1 nucleotides HP15_p187g162 and HP15_p187g163 are separated by 326 nucleotides
HP15_p187g161: HP15_p187g161 - conserved hypothetical protein, at 163,965 to 164,936
_p187g161
HP15_p187g162: HP15_p187g162 - hypothetical protein, at 164,938 to 165,183
_p187g162
HP15_p187g163: HP15_p187g163 - phage integrase family protein, at 165,510 to 166,814
_p187g163
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 164.518 kb on + strand, within HP15_p187g161 at 164.518 kb on - strand, within HP15_p187g161 at 164.526 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.543 kb on - strand, within HP15_p187g161 at 164.558 kb on - strand, within HP15_p187g161 at 164.560 kb on + strand, within HP15_p187g161 at 164.581 kb on + strand, within HP15_p187g161 at 164.639 kb on + strand, within HP15_p187g161 at 164.639 kb on + strand, within HP15_p187g161 at 164.642 kb on - strand, within HP15_p187g161 at 164.647 kb on - strand, within HP15_p187g161 at 164.647 kb on - strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.695 kb on + strand, within HP15_p187g161 at 164.745 kb on - strand, within HP15_p187g161 at 164.765 kb on + strand, within HP15_p187g161 at 164.847 kb on + strand at 164.847 kb on + strand at 164.859 kb on - strand at 164.859 kb on - strand at 164.860 kb on + strand at 164.867 kb on - strand at 164.917 kb on + strand at 164.988 kb on + strand, within HP15_p187g162 at 164.988 kb on + strand, within HP15_p187g162 at 164.996 kb on - strand, within HP15_p187g162 at 165.048 kb on + strand, within HP15_p187g162 at 165.050 kb on + strand, within HP15_p187g162 at 165.058 kb on - strand, within HP15_p187g162 at 165.077 kb on + strand, within HP15_p187g162 at 165.085 kb on - strand, within HP15_p187g162 at 165.120 kb on + strand, within HP15_p187g162 at 165.453 kb on - strand at 165.490 kb on - strand at 165.500 kb on - strand at 165.557 kb on - strand at 165.567 kb on - strand at 165.606 kb on + strand at 165.614 kb on - strand at 165.650 kb on - strand, within HP15_p187g163 at 165.650 kb on - strand, within HP15_p187g163 at 165.651 kb on - strand, within HP15_p187g163 at 165.688 kb on + strand, within HP15_p187g163 at 165.813 kb on + strand, within HP15_p187g163 at 165.838 kb on - strand, within HP15_p187g163 at 165.904 kb on - strand, within HP15_p187g163 at 165.924 kb on + strand, within HP15_p187g163 at 165.932 kb on - strand, within HP15_p187g163 at 166.022 kb on + strand, within HP15_p187g163 at 166.027 kb on + strand, within HP15_p187g163 at 166.040 kb on + strand, within HP15_p187g163 at 166.399 kb on - strand, within HP15_p187g163 at 166.438 kb on + strand, within HP15_p187g163 at 166.446 kb on - strand, within HP15_p187g163 at 166.452 kb on + strand, within HP15_p187g163 at 166.452 kb on + strand, within HP15_p187g163 at 166.460 kb on - strand, within HP15_p187g163 at 166.460 kb on - strand, within HP15_p187g163 at 166.460 kb on - strand, within HP15_p187g163 at 166.462 kb on + strand, within HP15_p187g163 at 166.470 kb on + strand, within HP15_p187g163 at 166.540 kb on - strand, within HP15_p187g163 at 166.568 kb on + strand, within HP15_p187g163 at 166.568 kb on + strand, within HP15_p187g163 at 166.608 kb on - strand, within HP15_p187g163 at 166.610 kb on + strand, within HP15_p187g163 at 166.705 kb on + strand at 166.749 kb on - strand at 166.801 kb on + strand at 166.838 kb on + strand at 166.846 kb on - strand at 167.156 kb on + strand at 167.164 kb on - strand at 167.264 kb on + strand at 167.307 kb on - strand at 167.374 kb on - strand at 167.406 kb on + strand at 167.505 kb on + strand at 167.572 kb on + strand at 167.665 kb on - strand at 167.710 kb on - strand at 167.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 164,518 + HP15_p187g161 0.57 -2.8 164,518 - HP15_p187g161 0.57 -1.4 164,526 - HP15_p187g161 0.58 -1.8 164,541 - HP15_p187g161 0.59 +2.2 164,541 - HP15_p187g161 0.59 -0.4 164,541 - HP15_p187g161 0.59 +1.7 164,543 - HP15_p187g161 0.59 -0.5 164,558 - HP15_p187g161 0.61 -0.8 164,560 + HP15_p187g161 0.61 +0.6 164,581 + HP15_p187g161 0.63 +1.6 164,639 + HP15_p187g161 0.69 -0.6 164,639 + HP15_p187g161 0.69 +0.1 164,642 - HP15_p187g161 0.70 +0.4 164,647 - HP15_p187g161 0.70 +1.7 164,647 - HP15_p187g161 0.70 -1.1 164,677 + HP15_p187g161 0.73 -0.6 164,677 + HP15_p187g161 0.73 +1.4 164,677 + HP15_p187g161 0.73 -1.3 164,677 + HP15_p187g161 0.73 -0.3 164,685 - HP15_p187g161 0.74 -2.3 164,685 - HP15_p187g161 0.74 -0.7 164,685 - HP15_p187g161 0.74 -0.2 164,685 - HP15_p187g161 0.74 -0.4 164,685 - HP15_p187g161 0.74 -1.5 164,685 - HP15_p187g161 0.74 +1.9 164,685 - HP15_p187g161 0.74 +1.8 164,695 + HP15_p187g161 0.75 +1.5 164,745 - HP15_p187g161 0.80 +1.3 164,765 + HP15_p187g161 0.82 -1.0 164,847 + +1.6 164,847 + +1.8 164,859 - -0.0 164,859 - +1.9 164,860 + +1.6 164,867 - -1.0 164,917 + +0.7 164,988 + HP15_p187g162 0.20 +1.8 164,988 + HP15_p187g162 0.20 +0.6 164,996 - HP15_p187g162 0.24 -2.8 165,048 + HP15_p187g162 0.45 -0.9 165,050 + HP15_p187g162 0.46 +0.2 165,058 - HP15_p187g162 0.49 -0.3 165,077 + HP15_p187g162 0.57 -0.4 165,085 - HP15_p187g162 0.60 -0.2 165,120 + HP15_p187g162 0.74 +1.2 165,453 - -0.2 165,490 - -0.0 165,500 - +1.3 165,557 - +1.0 165,567 - -0.5 165,606 + -0.4 165,614 - -0.3 165,650 - HP15_p187g163 0.11 -1.1 165,650 - HP15_p187g163 0.11 -0.7 165,651 - HP15_p187g163 0.11 +1.3 165,688 + HP15_p187g163 0.14 -0.2 165,813 + HP15_p187g163 0.23 -0.6 165,838 - HP15_p187g163 0.25 +0.4 165,904 - HP15_p187g163 0.30 +3.9 165,924 + HP15_p187g163 0.32 -0.3 165,932 - HP15_p187g163 0.32 -0.4 166,022 + HP15_p187g163 0.39 +0.6 166,027 + HP15_p187g163 0.40 +2.1 166,040 + HP15_p187g163 0.41 +0.9 166,399 - HP15_p187g163 0.68 -2.4 166,438 + HP15_p187g163 0.71 +3.1 166,446 - HP15_p187g163 0.72 +0.6 166,452 + HP15_p187g163 0.72 +0.8 166,452 + HP15_p187g163 0.72 -0.5 166,460 - HP15_p187g163 0.73 -1.1 166,460 - HP15_p187g163 0.73 -0.3 166,460 - HP15_p187g163 0.73 +0.9 166,462 + HP15_p187g163 0.73 -1.6 166,470 + HP15_p187g163 0.74 -0.7 166,540 - HP15_p187g163 0.79 +2.0 166,568 + HP15_p187g163 0.81 +2.2 166,568 + HP15_p187g163 0.81 +1.4 166,608 - HP15_p187g163 0.84 +1.5 166,610 + HP15_p187g163 0.84 +1.8 166,705 + +2.1 166,749 - -2.0 166,801 + -1.7 166,838 + +1.9 166,846 - -0.4 167,156 + -0.3 167,164 - +1.1 167,264 + +1.0 167,307 - +1.7 167,374 - +1.5 167,406 + +2.0 167,505 + +0.3 167,572 + +0.4 167,665 - +0.5 167,710 - -0.7 167,711 - -0.6
Or see this region's nucleotide sequence