Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g155 and HP15_p187g156 are separated by 137 nucleotides HP15_p187g156 and HP15_p187g157 are separated by 142 nucleotides HP15_p187g157 and HP15_p187g158 are separated by 231 nucleotides
HP15_p187g155: HP15_p187g155 - amidohydrolase, at 155,938 to 157,410
_p187g155
HP15_p187g156: HP15_p187g156 - lipoprotein, at 157,548 to 158,072
_p187g156
HP15_p187g157: HP15_p187g157 - fatty acid desaturase, at 158,215 to 159,114
_p187g157
HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383
_p187g158
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.229 kb on - strand, within HP15_p187g155 at 157.231 kb on + strand, within HP15_p187g155 at 157.238 kb on + strand, within HP15_p187g155 at 157.319 kb on - strand at 157.352 kb on - strand at 157.376 kb on + strand at 157.384 kb on - strand at 157.385 kb on - strand at 157.386 kb on - strand at 157.391 kb on + strand at 157.499 kb on + strand at 157.499 kb on + strand at 157.505 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.521 kb on - strand at 157.543 kb on + strand at 157.583 kb on + strand at 157.615 kb on + strand, within HP15_p187g156 at 157.615 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.647 kb on - strand, within HP15_p187g156 at 157.649 kb on + strand, within HP15_p187g156 at 157.684 kb on - strand, within HP15_p187g156 at 157.690 kb on + strand, within HP15_p187g156 at 157.744 kb on + strand, within HP15_p187g156 at 157.752 kb on - strand, within HP15_p187g156 at 157.777 kb on + strand, within HP15_p187g156 at 157.796 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.811 kb on + strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.819 kb on - strand, within HP15_p187g156 at 157.819 kb on - strand, within HP15_p187g156 at 157.827 kb on - strand, within HP15_p187g156 at 157.859 kb on + strand, within HP15_p187g156 at 157.889 kb on + strand, within HP15_p187g156 at 157.899 kb on + strand, within HP15_p187g156 at 157.899 kb on + strand, within HP15_p187g156 at 158.019 kb on + strand, within HP15_p187g156 at 158.021 kb on + strand at 158.029 kb on + strand at 158.039 kb on - strand at 158.059 kb on - strand at 158.086 kb on + strand at 158.094 kb on - strand at 158.105 kb on - strand at 158.166 kb on - strand at 158.227 kb on + strand at 158.254 kb on - strand at 158.271 kb on - strand at 158.300 kb on - strand at 158.302 kb on + strand at 158.311 kb on + strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.321 kb on + strand, within HP15_p187g157 at 158.321 kb on + strand, within HP15_p187g157 at 158.329 kb on - strand, within HP15_p187g157 at 158.329 kb on - strand, within HP15_p187g157 at 158.365 kb on + strand, within HP15_p187g157 at 158.391 kb on - strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.406 kb on - strand, within HP15_p187g157 at 158.411 kb on - strand, within HP15_p187g157 at 158.420 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.452 kb on - strand, within HP15_p187g157 at 158.468 kb on + strand, within HP15_p187g157 at 158.485 kb on - strand, within HP15_p187g157 at 158.486 kb on - strand, within HP15_p187g157 at 158.507 kb on - strand, within HP15_p187g157 at 158.509 kb on + strand, within HP15_p187g157 at 158.517 kb on - strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.571 kb on - strand, within HP15_p187g157 at 158.644 kb on + strand, within HP15_p187g157 at 158.723 kb on - strand, within HP15_p187g157 at 158.835 kb on + strand, within HP15_p187g157 at 158.841 kb on - strand, within HP15_p187g157 at 158.911 kb on - strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.990 kb on - strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.029 kb on - strand at 159.029 kb on - strand at 159.030 kb on - strand at 159.049 kb on + strand at 159.049 kb on + strand at 159.057 kb on - strand at 159.091 kb on + strand at 159.120 kb on + strand at 159.125 kb on + strand at 159.126 kb on + strand at 159.153 kb on + strand at 159.161 kb on - strand at 159.161 kb on - strand at 159.162 kb on + strand at 159.163 kb on + strand at 159.170 kb on - strand at 159.179 kb on - strand at 159.181 kb on + strand at 159.189 kb on - strand at 159.201 kb on - strand at 159.210 kb on - strand at 159.224 kb on - strand at 159.226 kb on + strand at 159.266 kb on + strand at 159.268 kb on + strand at 159.274 kb on - strand at 159.274 kb on - strand at 159.276 kb on - strand at 159.284 kb on - strand at 159.286 kb on + strand at 159.435 kb on + strand at 159.438 kb on + strand at 159.438 kb on + strand at 159.441 kb on - strand at 159.441 kb on - strand at 159.443 kb on + strand at 159.451 kb on - strand, within HP15_p187g158 at 159.487 kb on - strand, within HP15_p187g158 at 159.501 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.509 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.530 kb on + strand, within HP15_p187g158 at 159.538 kb on - strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.677 kb on - strand, within HP15_p187g158 at 159.730 kb on + strand, within HP15_p187g158 at 159.730 kb on - strand, within HP15_p187g158 at 159.748 kb on - strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.814 kb on + strand, within HP15_p187g158 at 159.832 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.909 kb on - strand, within HP15_p187g158 at 159.914 kb on - strand, within HP15_p187g158 at 159.944 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.012 kb on + strand, within HP15_p187g158 at 160.066 kb on + strand, within HP15_p187g158 at 160.067 kb on - strand, within HP15_p187g158 at 160.114 kb on + strand, within HP15_p187g158
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 157,221 + HP15_p187g155 0.87 -0.7 157,221 + HP15_p187g155 0.87 -0.6 157,221 + HP15_p187g155 0.87 -0.3 157,221 + HP15_p187g155 0.87 +1.7 157,229 - HP15_p187g155 0.88 +1.4 157,231 + HP15_p187g155 0.88 -0.0 157,238 + HP15_p187g155 0.88 -1.3 157,319 - +1.7 157,352 - -0.1 157,376 + -0.2 157,384 - +1.4 157,385 - -0.7 157,386 - -0.5 157,391 + -1.2 157,499 + -0.7 157,499 + -0.3 157,505 - +2.1 157,507 - -0.9 157,507 - +1.9 157,507 - -0.6 157,521 - +1.7 157,543 + -0.3 157,583 + -0.5 157,615 + HP15_p187g156 0.13 +1.7 157,615 + HP15_p187g156 0.13 -0.1 157,639 + HP15_p187g156 0.17 -0.6 157,639 + HP15_p187g156 0.17 -2.3 157,639 + HP15_p187g156 0.17 +0.1 157,639 + HP15_p187g156 0.17 -1.1 157,647 - HP15_p187g156 0.19 +1.6 157,649 + HP15_p187g156 0.19 -0.4 157,684 - HP15_p187g156 0.26 +0.2 157,690 + HP15_p187g156 0.27 -0.7 157,744 + HP15_p187g156 0.37 -0.4 157,752 - HP15_p187g156 0.39 -0.5 157,777 + HP15_p187g156 0.44 -2.7 157,796 + HP15_p187g156 0.47 +2.0 157,806 + HP15_p187g156 0.49 -0.1 157,806 + HP15_p187g156 0.49 -1.0 157,806 + HP15_p187g156 0.49 +1.3 157,806 + HP15_p187g156 0.49 +2.2 157,806 + HP15_p187g156 0.49 +2.0 157,811 + HP15_p187g156 0.50 -0.7 157,814 - HP15_p187g156 0.51 -0.2 157,814 - HP15_p187g156 0.51 +2.3 157,814 - HP15_p187g156 0.51 +0.0 157,814 - HP15_p187g156 0.51 +1.7 157,814 - HP15_p187g156 0.51 -1.0 157,814 - HP15_p187g156 0.51 -0.1 157,814 - HP15_p187g156 0.51 +1.5 157,819 - HP15_p187g156 0.52 -0.7 157,819 - HP15_p187g156 0.52 -0.3 157,827 - HP15_p187g156 0.53 -2.7 157,859 + HP15_p187g156 0.59 +1.2 157,889 + HP15_p187g156 0.65 +0.3 157,899 + HP15_p187g156 0.67 +0.1 157,899 + HP15_p187g156 0.67 +1.0 158,019 + HP15_p187g156 0.90 -0.4 158,021 + -0.4 158,029 + +1.9 158,039 - +1.7 158,059 - +0.2 158,086 + +2.0 158,094 - -1.1 158,105 - +0.3 158,166 - -1.2 158,227 + +2.0 158,254 - -1.2 158,271 - -0.2 158,300 - -0.6 158,302 + +1.0 158,311 + HP15_p187g157 0.11 -1.6 158,319 - HP15_p187g157 0.12 +1.9 158,319 - HP15_p187g157 0.12 +0.0 158,319 - HP15_p187g157 0.12 +2.0 158,321 + HP15_p187g157 0.12 -1.3 158,321 + HP15_p187g157 0.12 +1.8 158,329 - HP15_p187g157 0.13 +0.4 158,329 - HP15_p187g157 0.13 +1.6 158,365 + HP15_p187g157 0.17 +1.8 158,391 - HP15_p187g157 0.20 -0.4 158,398 + HP15_p187g157 0.20 -1.4 158,398 + HP15_p187g157 0.20 -1.8 158,406 - HP15_p187g157 0.21 +1.6 158,411 - HP15_p187g157 0.22 +1.8 158,420 - HP15_p187g157 0.23 +1.5 158,435 - HP15_p187g157 0.24 -0.7 158,435 - HP15_p187g157 0.24 -0.4 158,452 - HP15_p187g157 0.26 +0.7 158,468 + HP15_p187g157 0.28 -0.9 158,485 - HP15_p187g157 0.30 +2.2 158,486 - HP15_p187g157 0.30 -0.9 158,507 - HP15_p187g157 0.32 +1.7 158,509 + HP15_p187g157 0.33 -0.8 158,517 - HP15_p187g157 0.34 +0.1 158,521 + HP15_p187g157 0.34 -0.0 158,521 + HP15_p187g157 0.34 -0.6 158,523 + HP15_p187g157 0.34 +0.2 158,523 + HP15_p187g157 0.34 -0.3 158,531 - HP15_p187g157 0.35 -1.0 158,531 - HP15_p187g157 0.35 +1.1 158,531 - HP15_p187g157 0.35 -1.4 158,571 - HP15_p187g157 0.40 +1.6 158,644 + HP15_p187g157 0.48 -0.4 158,723 - HP15_p187g157 0.56 -0.1 158,835 + HP15_p187g157 0.69 -0.6 158,841 - HP15_p187g157 0.70 +0.6 158,911 - HP15_p187g157 0.77 +1.1 158,946 + HP15_p187g157 0.81 +1.9 158,946 + HP15_p187g157 0.81 +2.1 158,946 + HP15_p187g157 0.81 -0.6 158,946 + HP15_p187g157 0.81 -0.0 158,946 + HP15_p187g157 0.81 +1.1 158,951 + HP15_p187g157 0.82 +3.0 158,951 + HP15_p187g157 0.82 -1.3 158,951 + HP15_p187g157 0.82 -2.4 158,954 - HP15_p187g157 0.82 +1.6 158,954 - HP15_p187g157 0.82 +1.0 158,959 - HP15_p187g157 0.83 +0.4 158,959 - HP15_p187g157 0.83 -1.2 158,990 - HP15_p187g157 0.86 +0.4 159,021 + HP15_p187g157 0.90 -0.2 159,021 + HP15_p187g157 0.90 -0.2 159,029 - -1.4 159,029 - +1.6 159,030 - +0.2 159,049 + +0.6 159,049 + +0.9 159,057 - +2.8 159,091 + +1.5 159,120 + -0.4 159,125 + -1.1 159,126 + +1.6 159,153 + +2.2 159,161 - -0.6 159,161 - -0.8 159,162 + -1.0 159,163 + +1.7 159,170 - +1.6 159,179 - -0.5 159,181 + +1.0 159,189 - +0.0 159,201 - -0.3 159,210 - -0.2 159,224 - +1.6 159,226 + +0.2 159,266 + +1.9 159,268 + -0.7 159,274 - -0.6 159,274 - +0.3 159,276 - +0.2 159,284 - -0.7 159,286 + -0.4 159,435 + +2.2 159,438 + -1.6 159,438 + -0.2 159,441 - +0.0 159,441 - +0.8 159,443 + +0.1 159,451 - HP15_p187g158 0.10 +1.9 159,487 - HP15_p187g158 0.14 +1.2 159,501 + HP15_p187g158 0.15 -0.5 159,507 + HP15_p187g158 0.16 +2.0 159,507 + HP15_p187g158 0.16 -0.2 159,507 + HP15_p187g158 0.16 -0.7 159,507 + HP15_p187g158 0.16 +0.6 159,507 + HP15_p187g158 0.16 +1.7 159,507 + HP15_p187g158 0.16 +0.6 159,509 - HP15_p187g158 0.16 -0.1 159,515 - HP15_p187g158 0.16 +1.3 159,515 - HP15_p187g158 0.16 +0.9 159,515 - HP15_p187g158 0.16 +2.0 159,530 + HP15_p187g158 0.18 +2.4 159,538 - HP15_p187g158 0.18 +1.5 159,670 + HP15_p187g158 0.31 -0.4 159,670 + HP15_p187g158 0.31 -1.0 159,677 - HP15_p187g158 0.32 +2.8 159,730 + HP15_p187g158 0.37 +0.7 159,730 - HP15_p187g158 0.37 -0.4 159,748 - HP15_p187g158 0.39 +0.1 159,812 + HP15_p187g158 0.45 -0.0 159,812 + HP15_p187g158 0.45 +1.9 159,812 + HP15_p187g158 0.45 +1.9 159,814 + HP15_p187g158 0.45 -0.7 159,832 + HP15_p187g158 0.47 +1.5 159,906 + HP15_p187g158 0.54 +0.5 159,906 + HP15_p187g158 0.54 -0.1 159,909 - HP15_p187g158 0.54 -0.5 159,914 - HP15_p187g158 0.55 +2.0 159,944 + HP15_p187g158 0.58 -0.2 159,996 + HP15_p187g158 0.63 +2.0 159,996 + HP15_p187g158 0.63 +0.3 160,004 - HP15_p187g158 0.63 +0.3 160,004 - HP15_p187g158 0.63 +0.6 160,004 - HP15_p187g158 0.63 -2.6 160,012 + HP15_p187g158 0.64 +1.9 160,066 + HP15_p187g158 0.69 -2.5 160,067 - HP15_p187g158 0.69 -1.7 160,114 + HP15_p187g158 0.74 +0.6
Or see this region's nucleotide sequence