Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_429 and HP15_430 are separated by 112 nucleotides HP15_430 and HP15_431 are separated by 92 nucleotides
HP15_429: HP15_429 - GTP-binding protein TypA, at 428,169 to 429,980
_429
HP15_430: HP15_430 - peptidase S33, proline iminopeptidase 1, at 430,093 to 431,055
_430
HP15_431: HP15_431 - D-tyrosyl-tRNA(Tyr) deacylase, at 431,148 to 431,606
_431
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.193 kb on + strand, within HP15_429 at 429.193 kb on + strand, within HP15_429 at 429.201 kb on - strand, within HP15_429 at 429.240 kb on - strand, within HP15_429 at 429.406 kb on - strand, within HP15_429 at 429.449 kb on - strand, within HP15_429 at 429.667 kb on - strand, within HP15_429 at 429.686 kb on - strand, within HP15_429 at 429.835 kb on + strand at 429.838 kb on - strand at 429.871 kb on + strand at 429.917 kb on - strand at 429.918 kb on - strand at 429.988 kb on + strand at 430.209 kb on + strand, within HP15_430 at 430.291 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.319 kb on - strand, within HP15_430 at 430.329 kb on + strand, within HP15_430 at 430.364 kb on - strand, within HP15_430 at 430.377 kb on - strand, within HP15_430 at 430.458 kb on - strand, within HP15_430 at 430.604 kb on + strand, within HP15_430 at 430.670 kb on - strand, within HP15_430 at 430.700 kb on + strand, within HP15_430 at 430.765 kb on + strand, within HP15_430 at 430.824 kb on + strand, within HP15_430 at 430.827 kb on - strand, within HP15_430 at 430.893 kb on - strand, within HP15_430 at 430.903 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.930 kb on - strand, within HP15_430 at 430.932 kb on + strand, within HP15_430 at 430.952 kb on - strand, within HP15_430 at 431.108 kb on + strand at 431.108 kb on + strand at 431.124 kb on + strand at 431.234 kb on - strand, within HP15_431 at 431.406 kb on + strand, within HP15_431 at 431.414 kb on - strand, within HP15_431 at 431.489 kb on + strand, within HP15_431 at 431.507 kb on - strand, within HP15_431 at 431.537 kb on + strand, within HP15_431 at 431.543 kb on + strand, within HP15_431 at 431.550 kb on - strand, within HP15_431 at 431.565 kb on + strand at 431.659 kb on + strand at 431.659 kb on + strand at 431.728 kb on - strand at 431.775 kb on - strand at 431.783 kb on - strand at 431.914 kb on - strand at 432.002 kb on - strand at 432.005 kb on + strand at 432.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 429,193 + HP15_429 0.57 -0.1 429,193 + HP15_429 0.57 -0.4 429,201 - HP15_429 0.57 -1.6 429,240 - HP15_429 0.59 -1.2 429,406 - HP15_429 0.68 -2.1 429,449 - HP15_429 0.71 -1.5 429,667 - HP15_429 0.83 -0.3 429,686 - HP15_429 0.84 -0.4 429,835 + -1.4 429,838 - -2.4 429,871 + -0.4 429,917 - -0.7 429,918 - -1.4 429,988 + -1.1 430,209 + HP15_430 0.12 +2.0 430,291 + HP15_430 0.21 +1.8 430,311 + HP15_430 0.23 -1.5 430,311 + HP15_430 0.23 -0.7 430,319 - HP15_430 0.23 +1.7 430,329 + HP15_430 0.25 +2.2 430,364 - HP15_430 0.28 +2.4 430,377 - HP15_430 0.29 -0.2 430,458 - HP15_430 0.38 +1.8 430,604 + HP15_430 0.53 -0.4 430,670 - HP15_430 0.60 +0.1 430,700 + HP15_430 0.63 +0.2 430,765 + HP15_430 0.70 +0.5 430,824 + HP15_430 0.76 +1.0 430,827 - HP15_430 0.76 +2.2 430,893 - HP15_430 0.83 +0.9 430,903 + HP15_430 0.84 -0.7 430,926 + HP15_430 0.87 -0.0 430,926 + HP15_430 0.87 +2.4 430,930 - HP15_430 0.87 -1.5 430,932 + HP15_430 0.87 -1.0 430,952 - HP15_430 0.89 -0.2 431,108 + +0.3 431,108 + +1.2 431,124 + -2.0 431,234 - HP15_431 0.19 -1.9 431,406 + HP15_431 0.56 +1.1 431,414 - HP15_431 0.58 +0.7 431,489 + HP15_431 0.74 -0.2 431,507 - HP15_431 0.78 -1.5 431,537 + HP15_431 0.85 +2.2 431,543 + HP15_431 0.86 -0.3 431,550 - HP15_431 0.88 +1.0 431,565 + +2.6 431,659 + +1.3 431,659 + -0.4 431,728 - +0.2 431,775 - -1.8 431,783 - +0.3 431,914 - +1.2 432,002 - +2.6 432,005 + -2.9 432,009 + -1.7
Or see this region's nucleotide sequence