Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g118 and HP15_p187g119 are separated by 325 nucleotides HP15_p187g119 and HP15_p187g120 are separated by 83 nucleotides
HP15_p187g118: HP15_p187g118 - conserved hypothetical protein, at 118,811 to 119,971
_p187g118
HP15_p187g119: HP15_p187g119 - hyalin repeat protein, at 120,297 to 121,934
_p187g119
HP15_p187g120: HP15_p187g120 - secreted protein, at 122,018 to 123,472
_p187g120
Position (kb) 120
121
122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 119.303 kb on + strand, within HP15_p187g118 at 119.333 kb on - strand, within HP15_p187g118 at 119.407 kb on - strand, within HP15_p187g118 at 119.483 kb on - strand, within HP15_p187g118 at 119.490 kb on - strand, within HP15_p187g118 at 119.511 kb on + strand, within HP15_p187g118 at 119.531 kb on - strand, within HP15_p187g118 at 119.595 kb on + strand, within HP15_p187g118 at 119.605 kb on + strand, within HP15_p187g118 at 119.613 kb on + strand, within HP15_p187g118 at 119.613 kb on + strand, within HP15_p187g118 at 119.658 kb on + strand, within HP15_p187g118 at 119.659 kb on - strand, within HP15_p187g118 at 119.663 kb on + strand, within HP15_p187g118 at 119.663 kb on + strand, within HP15_p187g118 at 119.673 kb on + strand, within HP15_p187g118 at 119.673 kb on + strand, within HP15_p187g118 at 119.725 kb on + strand, within HP15_p187g118 at 119.727 kb on + strand, within HP15_p187g118 at 119.727 kb on + strand, within HP15_p187g118 at 119.735 kb on - strand, within HP15_p187g118 at 119.739 kb on + strand, within HP15_p187g118 at 119.747 kb on - strand, within HP15_p187g118 at 119.757 kb on - strand, within HP15_p187g118 at 119.809 kb on - strand, within HP15_p187g118 at 120.117 kb on + strand at 120.117 kb on + strand at 120.117 kb on + strand at 120.117 kb on + strand at 120.117 kb on + strand at 120.125 kb on - strand at 120.125 kb on - strand at 120.127 kb on + strand at 120.256 kb on + strand at 120.258 kb on + strand at 120.272 kb on + strand at 120.280 kb on - strand at 120.287 kb on + strand at 120.295 kb on - strand at 120.306 kb on + strand at 120.319 kb on - strand at 120.319 kb on - strand at 120.322 kb on - strand at 120.332 kb on + strand at 120.392 kb on + strand at 120.398 kb on - strand at 120.405 kb on + strand at 120.413 kb on - strand at 120.413 kb on - strand at 120.464 kb on - strand, within HP15_p187g119 at 120.471 kb on - strand, within HP15_p187g119 at 120.492 kb on + strand, within HP15_p187g119 at 120.522 kb on + strand, within HP15_p187g119 at 120.532 kb on - strand, within HP15_p187g119 at 120.538 kb on + strand, within HP15_p187g119 at 120.559 kb on - strand, within HP15_p187g119 at 120.559 kb on - strand, within HP15_p187g119 at 120.559 kb on - strand, within HP15_p187g119 at 120.567 kb on - strand, within HP15_p187g119 at 120.574 kb on + strand, within HP15_p187g119 at 120.574 kb on + strand, within HP15_p187g119 at 120.582 kb on - strand, within HP15_p187g119 at 120.582 kb on - strand, within HP15_p187g119 at 120.604 kb on - strand, within HP15_p187g119 at 120.614 kb on + strand, within HP15_p187g119 at 120.634 kb on - strand, within HP15_p187g119 at 120.663 kb on - strand, within HP15_p187g119 at 120.707 kb on + strand, within HP15_p187g119 at 120.715 kb on - strand, within HP15_p187g119 at 120.759 kb on + strand, within HP15_p187g119 at 120.774 kb on + strand, within HP15_p187g119 at 120.782 kb on - strand, within HP15_p187g119 at 120.782 kb on - strand, within HP15_p187g119 at 120.789 kb on + strand, within HP15_p187g119 at 120.834 kb on - strand, within HP15_p187g119 at 120.866 kb on + strand, within HP15_p187g119 at 120.866 kb on + strand, within HP15_p187g119 at 120.886 kb on + strand, within HP15_p187g119 at 120.886 kb on + strand, within HP15_p187g119 at 120.966 kb on + strand, within HP15_p187g119 at 120.974 kb on - strand, within HP15_p187g119 at 120.989 kb on + strand, within HP15_p187g119 at 121.004 kb on - strand, within HP15_p187g119 at 121.049 kb on - strand, within HP15_p187g119 at 121.095 kb on + strand, within HP15_p187g119 at 121.103 kb on - strand, within HP15_p187g119 at 121.110 kb on - strand, within HP15_p187g119 at 121.128 kb on - strand, within HP15_p187g119 at 121.184 kb on + strand, within HP15_p187g119 at 121.279 kb on + strand, within HP15_p187g119 at 121.281 kb on - strand, within HP15_p187g119 at 121.319 kb on + strand, within HP15_p187g119 at 121.320 kb on + strand, within HP15_p187g119 at 121.320 kb on + strand, within HP15_p187g119 at 121.320 kb on - strand, within HP15_p187g119 at 121.327 kb on - strand, within HP15_p187g119 at 121.334 kb on + strand, within HP15_p187g119 at 121.334 kb on + strand, within HP15_p187g119 at 121.378 kb on - strand, within HP15_p187g119 at 121.393 kb on + strand, within HP15_p187g119 at 121.393 kb on + strand, within HP15_p187g119 at 121.396 kb on - strand, within HP15_p187g119 at 121.401 kb on - strand, within HP15_p187g119 at 121.401 kb on - strand, within HP15_p187g119 at 121.447 kb on + strand, within HP15_p187g119 at 121.449 kb on + strand, within HP15_p187g119 at 121.451 kb on + strand, within HP15_p187g119 at 121.459 kb on - strand, within HP15_p187g119 at 121.459 kb on - strand, within HP15_p187g119 at 121.459 kb on - strand, within HP15_p187g119 at 121.459 kb on - strand, within HP15_p187g119 at 121.459 kb on - strand, within HP15_p187g119 at 121.461 kb on + strand, within HP15_p187g119 at 121.474 kb on + strand, within HP15_p187g119 at 121.474 kb on + strand, within HP15_p187g119 at 121.474 kb on + strand, within HP15_p187g119 at 121.482 kb on - strand, within HP15_p187g119 at 121.482 kb on - strand, within HP15_p187g119 at 121.482 kb on - strand, within HP15_p187g119 at 121.505 kb on + strand, within HP15_p187g119 at 121.519 kb on + strand, within HP15_p187g119 at 121.537 kb on - strand, within HP15_p187g119 at 121.539 kb on + strand, within HP15_p187g119 at 121.542 kb on - strand, within HP15_p187g119 at 121.557 kb on - strand, within HP15_p187g119 at 121.611 kb on + strand, within HP15_p187g119 at 121.611 kb on + strand, within HP15_p187g119 at 121.619 kb on - strand, within HP15_p187g119 at 121.644 kb on - strand, within HP15_p187g119 at 121.644 kb on - strand, within HP15_p187g119 at 121.658 kb on - strand, within HP15_p187g119 at 121.688 kb on + strand, within HP15_p187g119 at 121.747 kb on - strand, within HP15_p187g119 at 121.747 kb on - strand, within HP15_p187g119 at 121.851 kb on - strand at 121.857 kb on - strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.867 kb on + strand at 121.875 kb on - strand at 121.875 kb on - strand at 121.875 kb on - strand at 121.875 kb on - strand at 121.875 kb on - strand at 121.877 kb on + strand at 121.882 kb on + strand at 121.914 kb on + strand at 121.933 kb on + strand at 121.941 kb on - strand at 121.948 kb on + strand at 121.956 kb on - strand at 121.965 kb on + strand at 121.987 kb on - strand at 122.051 kb on - strand at 122.053 kb on + strand at 122.053 kb on + strand at 122.061 kb on - strand at 122.061 kb on - strand at 122.106 kb on + strand at 122.123 kb on + strand at 122.143 kb on + strand at 122.198 kb on - strand, within HP15_p187g120 at 122.198 kb on - strand, within HP15_p187g120 at 122.213 kb on + strand, within HP15_p187g120 at 122.225 kb on + strand, within HP15_p187g120 at 122.225 kb on - strand, within HP15_p187g120 at 122.227 kb on + strand, within HP15_p187g120 at 122.227 kb on + strand, within HP15_p187g120 at 122.227 kb on + strand, within HP15_p187g120 at 122.235 kb on - strand, within HP15_p187g120 at 122.235 kb on - strand, within HP15_p187g120 at 122.235 kb on - strand, within HP15_p187g120 at 122.243 kb on + strand, within HP15_p187g120 at 122.291 kb on - strand, within HP15_p187g120 at 122.297 kb on + strand, within HP15_p187g120 at 122.357 kb on + strand, within HP15_p187g120 at 122.390 kb on - strand, within HP15_p187g120 at 122.390 kb on - strand, within HP15_p187g120 at 122.417 kb on - strand, within HP15_p187g120 at 122.515 kb on - strand, within HP15_p187g120 at 122.535 kb on - strand, within HP15_p187g120 at 122.551 kb on + strand, within HP15_p187g120 at 122.564 kb on + strand, within HP15_p187g120 at 122.579 kb on + strand, within HP15_p187g120 at 122.579 kb on + strand, within HP15_p187g120 at 122.579 kb on + strand, within HP15_p187g120 at 122.587 kb on - strand, within HP15_p187g120 at 122.587 kb on - strand, within HP15_p187g120 at 122.589 kb on + strand, within HP15_p187g120 at 122.640 kb on + strand, within HP15_p187g120 at 122.640 kb on + strand, within HP15_p187g120 at 122.670 kb on - strand, within HP15_p187g120 at 122.698 kb on - strand, within HP15_p187g120 at 122.785 kb on - strand, within HP15_p187g120 at 122.825 kb on + strand, within HP15_p187g120 at 122.838 kb on - strand, within HP15_p187g120 at 122.852 kb on - strand, within HP15_p187g120 at 122.873 kb on + strand, within HP15_p187g120 at 122.881 kb on - strand, within HP15_p187g120 at 122.881 kb on - strand, within HP15_p187g120 at 122.882 kb on - strand, within HP15_p187g120
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 119,303 + HP15_p187g118 0.42 -0.5 119,333 - HP15_p187g118 0.45 +0.7 119,407 - HP15_p187g118 0.51 -0.9 119,483 - HP15_p187g118 0.58 +2.6 119,490 - HP15_p187g118 0.58 +1.1 119,511 + HP15_p187g118 0.60 -1.0 119,531 - HP15_p187g118 0.62 +2.5 119,595 + HP15_p187g118 0.68 -0.4 119,605 + HP15_p187g118 0.68 -0.1 119,613 + HP15_p187g118 0.69 -1.1 119,613 + HP15_p187g118 0.69 -0.3 119,658 + HP15_p187g118 0.73 -2.2 119,659 - HP15_p187g118 0.73 +0.7 119,663 + HP15_p187g118 0.73 +0.1 119,663 + HP15_p187g118 0.73 -0.2 119,673 + HP15_p187g118 0.74 +0.2 119,673 + HP15_p187g118 0.74 -0.3 119,725 + HP15_p187g118 0.79 -0.0 119,727 + HP15_p187g118 0.79 -0.5 119,727 + HP15_p187g118 0.79 +1.6 119,735 - HP15_p187g118 0.80 -0.3 119,739 + HP15_p187g118 0.80 -2.1 119,747 - HP15_p187g118 0.81 +1.9 119,757 - HP15_p187g118 0.81 -0.6 119,809 - HP15_p187g118 0.86 -3.3 120,117 + +1.7 120,117 + -1.0 120,117 + +0.6 120,117 + -1.4 120,117 + +0.1 120,125 - -0.7 120,125 - +1.7 120,127 + +2.1 120,256 + -3.9 120,258 + -0.5 120,272 + +0.6 120,280 - -1.0 120,287 + +0.5 120,295 - -0.9 120,306 + -0.0 120,319 - +1.6 120,319 - -0.6 120,322 - +2.6 120,332 + +0.8 120,392 + +0.2 120,398 - -1.1 120,405 + +3.6 120,413 - -1.0 120,413 - -0.9 120,464 - HP15_p187g119 0.10 +1.6 120,471 - HP15_p187g119 0.11 +2.9 120,492 + HP15_p187g119 0.12 +2.0 120,522 + HP15_p187g119 0.14 +3.3 120,532 - HP15_p187g119 0.14 +2.7 120,538 + HP15_p187g119 0.15 +0.4 120,559 - HP15_p187g119 0.16 +2.2 120,559 - HP15_p187g119 0.16 +2.1 120,559 - HP15_p187g119 0.16 -0.2 120,567 - HP15_p187g119 0.16 +1.0 120,574 + HP15_p187g119 0.17 -1.0 120,574 + HP15_p187g119 0.17 +1.0 120,582 - HP15_p187g119 0.17 -0.3 120,582 - HP15_p187g119 0.17 +0.0 120,604 - HP15_p187g119 0.19 -0.4 120,614 + HP15_p187g119 0.19 -0.2 120,634 - HP15_p187g119 0.21 +0.5 120,663 - HP15_p187g119 0.22 +1.4 120,707 + HP15_p187g119 0.25 +0.2 120,715 - HP15_p187g119 0.26 +0.1 120,759 + HP15_p187g119 0.28 +1.8 120,774 + HP15_p187g119 0.29 +1.9 120,782 - HP15_p187g119 0.30 +1.8 120,782 - HP15_p187g119 0.30 -0.0 120,789 + HP15_p187g119 0.30 -2.9 120,834 - HP15_p187g119 0.33 +1.3 120,866 + HP15_p187g119 0.35 +1.2 120,866 + HP15_p187g119 0.35 +2.0 120,886 + HP15_p187g119 0.36 +0.5 120,886 + HP15_p187g119 0.36 +0.2 120,966 + HP15_p187g119 0.41 -1.7 120,974 - HP15_p187g119 0.41 +0.0 120,989 + HP15_p187g119 0.42 -1.9 121,004 - HP15_p187g119 0.43 +1.3 121,049 - HP15_p187g119 0.46 +1.3 121,095 + HP15_p187g119 0.49 -2.0 121,103 - HP15_p187g119 0.49 +1.8 121,110 - HP15_p187g119 0.50 -0.6 121,128 - HP15_p187g119 0.51 +1.7 121,184 + HP15_p187g119 0.54 +0.8 121,279 + HP15_p187g119 0.60 -3.2 121,281 - HP15_p187g119 0.60 -0.7 121,319 + HP15_p187g119 0.62 +1.2 121,320 + HP15_p187g119 0.62 -0.8 121,320 + HP15_p187g119 0.62 -0.6 121,320 - HP15_p187g119 0.62 -0.6 121,327 - HP15_p187g119 0.63 +0.9 121,334 + HP15_p187g119 0.63 +1.0 121,334 + HP15_p187g119 0.63 -0.7 121,378 - HP15_p187g119 0.66 +0.9 121,393 + HP15_p187g119 0.67 -0.3 121,393 + HP15_p187g119 0.67 -0.1 121,396 - HP15_p187g119 0.67 +2.2 121,401 - HP15_p187g119 0.67 +1.9 121,401 - HP15_p187g119 0.67 -1.2 121,447 + HP15_p187g119 0.70 -0.4 121,449 + HP15_p187g119 0.70 -0.8 121,451 + HP15_p187g119 0.70 +0.1 121,459 - HP15_p187g119 0.71 +0.5 121,459 - HP15_p187g119 0.71 +0.7 121,459 - HP15_p187g119 0.71 -1.2 121,459 - HP15_p187g119 0.71 -0.3 121,459 - HP15_p187g119 0.71 -1.2 121,461 + HP15_p187g119 0.71 +0.1 121,474 + HP15_p187g119 0.72 +0.3 121,474 + HP15_p187g119 0.72 +0.1 121,474 + HP15_p187g119 0.72 +2.0 121,482 - HP15_p187g119 0.72 +0.1 121,482 - HP15_p187g119 0.72 +2.2 121,482 - HP15_p187g119 0.72 +1.3 121,505 + HP15_p187g119 0.74 +2.3 121,519 + HP15_p187g119 0.75 +1.4 121,537 - HP15_p187g119 0.76 +1.8 121,539 + HP15_p187g119 0.76 +1.9 121,542 - HP15_p187g119 0.76 +0.7 121,557 - HP15_p187g119 0.77 +0.1 121,611 + HP15_p187g119 0.80 +1.4 121,611 + HP15_p187g119 0.80 -0.3 121,619 - HP15_p187g119 0.81 +2.2 121,644 - HP15_p187g119 0.82 -0.5 121,644 - HP15_p187g119 0.82 -1.4 121,658 - HP15_p187g119 0.83 -0.8 121,688 + HP15_p187g119 0.85 -0.0 121,747 - HP15_p187g119 0.89 +1.5 121,747 - HP15_p187g119 0.89 +2.1 121,851 - +2.4 121,857 - +2.0 121,867 + -1.9 121,867 + -0.2 121,867 + +0.6 121,867 + +1.3 121,867 + +1.7 121,867 + -2.5 121,867 + -2.7 121,875 - +1.9 121,875 - +1.1 121,875 - +2.0 121,875 - -0.4 121,875 - -1.4 121,877 + -0.5 121,882 + -2.5 121,914 + -0.9 121,933 + +1.8 121,941 - +1.5 121,948 + +1.5 121,956 - -0.3 121,965 + -0.0 121,987 - +2.6 122,051 - +1.1 122,053 + -0.1 122,053 + -1.1 122,061 - -0.6 122,061 - +2.4 122,106 + +0.1 122,123 + -0.3 122,143 + +1.8 122,198 - HP15_p187g120 0.12 +1.7 122,198 - HP15_p187g120 0.12 -0.3 122,213 + HP15_p187g120 0.13 -0.0 122,225 + HP15_p187g120 0.14 +2.0 122,225 - HP15_p187g120 0.14 +1.9 122,227 + HP15_p187g120 0.14 +2.5 122,227 + HP15_p187g120 0.14 +0.3 122,227 + HP15_p187g120 0.14 -0.5 122,235 - HP15_p187g120 0.15 +1.6 122,235 - HP15_p187g120 0.15 -0.6 122,235 - HP15_p187g120 0.15 -0.9 122,243 + HP15_p187g120 0.15 -0.7 122,291 - HP15_p187g120 0.19 -2.0 122,297 + HP15_p187g120 0.19 -2.0 122,357 + HP15_p187g120 0.23 -1.0 122,390 - HP15_p187g120 0.26 +1.3 122,390 - HP15_p187g120 0.26 +0.4 122,417 - HP15_p187g120 0.27 -1.5 122,515 - HP15_p187g120 0.34 -0.7 122,535 - HP15_p187g120 0.36 +0.8 122,551 + HP15_p187g120 0.37 +0.3 122,564 + HP15_p187g120 0.38 -0.9 122,579 + HP15_p187g120 0.39 +1.3 122,579 + HP15_p187g120 0.39 +1.2 122,579 + HP15_p187g120 0.39 -0.2 122,587 - HP15_p187g120 0.39 -0.2 122,587 - HP15_p187g120 0.39 +3.2 122,589 + HP15_p187g120 0.39 -0.6 122,640 + HP15_p187g120 0.43 -0.5 122,640 + HP15_p187g120 0.43 +0.1 122,670 - HP15_p187g120 0.45 -1.4 122,698 - HP15_p187g120 0.47 +0.2 122,785 - HP15_p187g120 0.53 -1.3 122,825 + HP15_p187g120 0.55 -1.2 122,838 - HP15_p187g120 0.56 +2.1 122,852 - HP15_p187g120 0.57 +1.6 122,873 + HP15_p187g120 0.59 -0.4 122,881 - HP15_p187g120 0.59 +3.5 122,881 - HP15_p187g120 0.59 -0.1 122,882 - HP15_p187g120 0.59 -0.2
Or see this region's nucleotide sequence