Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g37

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
28,581	-		HP15_p187g35	0.77	+0.2
28,623	+		HP15_p187g35	0.82	+1.5
28,631	-		HP15_p187g35	0.83	-0.1
28,645	+		HP15_p187g35	0.85	-0.7
28,693	-				+1.9
28,693	-				-0.3
28,766	+				+1.7
28,766	+				+0.2
28,766	+				-1.1
28,766	+				-0.1
28,766	+				+2.4
28,774	-				-0.9
28,774	-				+1.6
28,774	-				+1.1
28,793	-				+2.1
28,858	+				+0.4
28,873	+				+0.6
28,881	-				+1.8
28,943	+		HP15_p187g36	0.13	+2.5
28,943	+		HP15_p187g36	0.13	-0.4
28,951	-		HP15_p187g36	0.14	+0.2
29,014	-		HP15_p187g36	0.26	-0.6
29,084	+		HP15_p187g36	0.39	-1.2
29,092	-		HP15_p187g36	0.41	-0.0
29,094	+		HP15_p187g36	0.41	-0.8
29,107	+		HP15_p187g36	0.44	+0.5
29,107	+		HP15_p187g36	0.44	+1.5
29,108	+		HP15_p187g36	0.44	-0.4
29,110	-		HP15_p187g36	0.44	-0.3
29,145	+		HP15_p187g36	0.51	-0.4
29,153	-		HP15_p187g36	0.52	-2.2
29,153	-		HP15_p187g36	0.52	-0.2
29,252	-		HP15_p187g36	0.71	-0.6
29,271	+		HP15_p187g36	0.74	-0.8
29,318	+		HP15_p187g36	0.83	-0.2
29,318	+		HP15_p187g36	0.83	+0.4
29,326	-		HP15_p187g36	0.85	-0.7
29,326	-		HP15_p187g36	0.85	-0.0
29,326	-		HP15_p187g36	0.85	+0.0
29,388	+				+1.3
29,448	+				+0.9
29,448	+				-0.6
29,456	-				+1.7
29,461	+				+1.3
29,469	-				-3.9
29,487	+				-0.5
29,512	-				-0.5
29,662	-		HP15_p187g37	0.10	+0.2
29,662	-		HP15_p187g37	0.10	-0.8
29,741	+		HP15_p187g37	0.14	+2.0
29,817	-		HP15_p187g37	0.18	+1.2
29,832	-		HP15_p187g37	0.19	-0.8
29,864	-		HP15_p187g37	0.20	-0.3
29,913	+		HP15_p187g37	0.23	+1.7
29,997	-		HP15_p187g37	0.27	+2.2
30,030	-		HP15_p187g37	0.28	+2.0
30,039	+		HP15_p187g37	0.29	+0.1
30,039	+		HP15_p187g37	0.29	-0.9
30,039	+		HP15_p187g37	0.29	+1.3
30,047	-		HP15_p187g37	0.29	-0.8
30,047	-		HP15_p187g37	0.29	-0.3
30,047	-		HP15_p187g37	0.29	+1.7
30,047	-		HP15_p187g37	0.29	-1.1
30,057	-		HP15_p187g37	0.30	-0.8
30,073	-		HP15_p187g37	0.30	+0.1
30,085	-		HP15_p187g37	0.31	-2.3
30,142	-		HP15_p187g37	0.34	-0.3
30,214	+		HP15_p187g37	0.37	-0.6
30,288	+		HP15_p187g37	0.41	+1.6
30,296	-		HP15_p187g37	0.41	-0.8
30,353	+		HP15_p187g37	0.44	-1.8
30,361	-		HP15_p187g37	0.44	-0.3
30,491	-		HP15_p187g37	0.51	-0.9
30,491	-		HP15_p187g37	0.51	-0.9
30,532	-		HP15_p187g37	0.53	+1.4
30,540	+		HP15_p187g37	0.53	+2.4
30,574	+		HP15_p187g37	0.55	+1.9
30,593	+		HP15_p187g37	0.56	+2.2
30,610	+		HP15_p187g37	0.57	-0.6
30,674	+		HP15_p187g37	0.60	-0.0
30,711	+		HP15_p187g37	0.62	+0.5
30,711	+		HP15_p187g37	0.62	+1.8
30,714	-		HP15_p187g37	0.62	-1.0
30,714	-		HP15_p187g37	0.62	-0.9
30,719	-		HP15_p187g37	0.62	-0.8
30,731	-		HP15_p187g37	0.63	-0.1
30,756	+		HP15_p187g37	0.64	+0.5
30,764	-		HP15_p187g37	0.64	+0.1
30,773	-		HP15_p187g37	0.65	-1.1
30,781	+		HP15_p187g37	0.65	+1.8
30,869	+		HP15_p187g37	0.69	-1.4
30,878	+		HP15_p187g37	0.70	+0.6
30,886	-		HP15_p187g37	0.70	+1.9
30,960	+		HP15_p187g37	0.74	+2.2
31,023	+		HP15_p187g37	0.77	-1.9
31,052	+		HP15_p187g37	0.78	-1.0
31,091	-		HP15_p187g37	0.80	-0.1
31,091	-		HP15_p187g37	0.80	+0.5
31,128	+		HP15_p187g37	0.82	-0.4
31,136	-		HP15_p187g37	0.82	-0.6
31,143	+		HP15_p187g37	0.83	-0.9
31,148	-		HP15_p187g37	0.83	-0.9
31,151	-		HP15_p187g37	0.83	+1.9
31,169	+		HP15_p187g37	0.84	+2.1
31,169	+		HP15_p187g37	0.84	-1.1
31,169	+		HP15_p187g37	0.84	-1.2
31,177	-		HP15_p187g37	0.84	+0.1
31,177	-		HP15_p187g37	0.84	+0.7
31,177	-		HP15_p187g37	0.84	-0.5
31,177	-		HP15_p187g37	0.84	+0.1
31,177	-		HP15_p187g37	0.84	+0.8
31,177	-		HP15_p187g37	0.84	-0.9
31,219	+		HP15_p187g37	0.86	-2.1
31,219	+		HP15_p187g37	0.86	+1.7
31,219	+		HP15_p187g37	0.86	+1.2
31,227	-		HP15_p187g37	0.87	-1.0
31,300	+				+1.5
31,347	+				-1.8
31,355	-				+1.4
31,355	-				-0.9
31,357	+				+2.0
31,380	-				+2.1
31,384	+				-1.7
31,384	+				-0.8
31,392	-				-0.8
31,392	-				+1.8
31,392	-				+2.6
31,392	-				+0.6
31,396	+				-0.2
31,396	+				+0.3
31,430	+				-2.7
31,430	+				+1.5
31,430	+				+1.7
31,430	+				+0.6
31,430	+				+2.0
31,430	+				-0.1
31,430	+				-1.0
31,430	+				-0.8
31,430	+				-1.6
31,430	+				-0.7
31,430	+				-0.1
31,436	+				+1.1
31,438	-				-1.1
31,438	-				-1.0
31,438	-				-1.3
31,438	-				+2.0
31,438	-				+0.0
31,438	-				-0.5
31,438	-				-0.7
31,438	-				+1.7
31,438	-				+0.4
31,438	-				+1.5
31,438	-				-2.2
31,438	-				+1.7
31,464	-				+1.4
31,464	-				+0.9
31,464	-				+0.1
31,464	-				+0.6
31,464	-				-0.8
31,484	+				+0.0
31,536	+				+0.2
31,536	+				-0.8
31,536	+				-0.1
31,543	+				-0.2
31,623	+				-1.1
31,631	-		HP15_p187g38	0.11	+0.0
31,650	-		HP15_p187g38	0.13	-0.4
31,677	+		HP15_p187g38	0.15	-0.5
31,677	+		HP15_p187g38	0.15	+1.8
31,677	+		HP15_p187g38	0.15	+1.3
31,677	+		HP15_p187g38	0.15	+2.2
31,677	+		HP15_p187g38	0.15	+2.2
31,677	+		HP15_p187g38	0.15	+0.4
31,677	+		HP15_p187g38	0.15	+0.8
31,677	+		HP15_p187g38	0.15	+1.1
31,677	+		HP15_p187g38	0.15	-1.2
31,685	-		HP15_p187g38	0.16	+0.6
31,685	-		HP15_p187g38	0.16	+0.8
31,714	+		HP15_p187g38	0.19	+1.6
31,749	+		HP15_p187g38	0.22	+2.0
31,774	-		HP15_p187g38	0.25	+1.1
31,787	+		HP15_p187g38	0.26	-0.0
31,862	+		HP15_p187g38	0.33	-1.1
31,867	+		HP15_p187g38	0.34	+1.5
31,881	+		HP15_p187g38	0.35	+2.1
31,881	+		HP15_p187g38	0.35	-0.4
31,883	+		HP15_p187g38	0.35	+1.8
31,883	+		HP15_p187g38	0.35	+0.6
31,883	+		HP15_p187g38	0.35	-0.0
31,883	+		HP15_p187g38	0.35	+2.1
31,889	-		HP15_p187g38	0.36	+0.3
31,890	+		HP15_p187g38	0.36	-0.1
31,890	+		HP15_p187g38	0.36	+1.7
31,890	+		HP15_p187g38	0.36	-0.4
31,890	+		HP15_p187g38	0.36	-1.2
31,890	+		HP15_p187g38	0.36	-0.9
31,891	-		HP15_p187g38	0.36	+0.4
31,898	-		HP15_p187g38	0.37	+0.6
31,898	-		HP15_p187g38	0.37	-1.4
31,898	-		HP15_p187g38	0.37	-1.6
31,898	-		HP15_p187g38	0.37	+1.7
31,898	-		HP15_p187g38	0.37	-1.0
31,898	-		HP15_p187g38	0.37	+2.6
31,936	-		HP15_p187g38	0.40	-0.9
31,943	+		HP15_p187g38	0.41	-0.5
31,988	+		HP15_p187g38	0.45	+1.1
31,989	+		HP15_p187g38	0.45	-0.0
31,996	+		HP15_p187g38	0.46	-0.4
31,998	-		HP15_p187g38	0.46	+0.3
31,998	-		HP15_p187g38	0.46	+0.9
31,998	-		HP15_p187g38	0.46	-1.4
32,049	-		HP15_p187g38	0.51	-0.3
32,143	+		HP15_p187g38	0.60	-1.8
32,143	+		HP15_p187g38	0.60	-1.0
32,143	+		HP15_p187g38	0.60	-0.7
32,151	-		HP15_p187g38	0.61	+0.1
32,151	-		HP15_p187g38	0.61	+2.0
32,151	-		HP15_p187g38	0.61	-2.0
32,151	-		HP15_p187g38	0.61	+0.1
32,180	+		HP15_p187g38	0.64	-0.8
32,193	-		HP15_p187g38	0.65	-0.5
32,233	-		HP15_p187g38	0.69	-1.4
32,249	-		HP15_p187g38	0.71	-0.5
32,277	+		HP15_p187g38	0.73	+1.8
32,280	-		HP15_p187g38	0.74	-0.3
32,285	-		HP15_p187g38	0.74	+0.5
32,285	-		HP15_p187g38	0.74	+1.9
32,349	+		HP15_p187g38	0.80	-0.9
32,349	+		HP15_p187g38	0.80	+1.9
32,349	+		HP15_p187g38	0.80	-1.1
32,349	+		HP15_p187g38	0.80	+2.2
32,349	+		HP15_p187g38	0.80	-1.2
32,355	+		HP15_p187g38	0.81	+1.7
32,356	+		HP15_p187g38	0.81	-0.2
32,357	-		HP15_p187g38	0.81	-0.6
32,464	-				+2.3
32,476	+				-1.0
32,496	-				+0.6