Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g19 and HP15_p42g20 overlap by 1 nucleotides HP15_p42g20 and HP15_p42g21 are separated by 348 nucleotides HP15_p42g21 and HP15_p42g22 are separated by 52 nucleotides
HP15_p42g19: HP15_p42g19 - transfer origin protein, TraL, at 12,990 to 13,715
_p42g19
HP15_p42g20: HP15_p42g20 - TraK-like protein of DNA transfer, at 13,715 to 14,146
_p42g20
HP15_p42g21: HP15_p42g21 - oriT binding protein TraJ, at 14,495 to 14,866
_p42g21
HP15_p42g22: HP15_p42g22 - TraI DNA relaxase, at 14,919 to 17,186
_p42g22
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 13.540 kb on + strand, within HP15_p42g19 at 13.565 kb on + strand, within HP15_p42g19 at 13.574 kb on + strand, within HP15_p42g19 at 13.623 kb on - strand, within HP15_p42g19 at 13.638 kb on + strand, within HP15_p42g19 at 13.764 kb on + strand, within HP15_p42g20 at 14.067 kb on + strand, within HP15_p42g20 at 14.483 kb on - strand at 14.514 kb on - strand at 14.638 kb on - strand, within HP15_p42g21 at 14.669 kb on - strand, within HP15_p42g21 at 14.671 kb on + strand, within HP15_p42g21 at 14.678 kb on + strand, within HP15_p42g21 at 14.764 kb on - strand, within HP15_p42g21 at 14.963 kb on - strand at 14.986 kb on - strand at 14.997 kb on + strand at 14.997 kb on + strand at 15.000 kb on - strand at 15.074 kb on - strand at 15.091 kb on - strand at 15.168 kb on - strand, within HP15_p42g22 at 15.191 kb on - strand, within HP15_p42g22 at 15.209 kb on + strand, within HP15_p42g22 at 15.217 kb on - strand, within HP15_p42g22 at 15.217 kb on - strand, within HP15_p42g22 at 15.222 kb on - strand, within HP15_p42g22 at 15.224 kb on - strand, within HP15_p42g22 at 15.375 kb on - strand, within HP15_p42g22 at 15.486 kb on + strand, within HP15_p42g22 at 15.491 kb on + strand, within HP15_p42g22 at 15.493 kb on - strand, within HP15_p42g22 at 15.596 kb on - strand, within HP15_p42g22 at 15.601 kb on - strand, within HP15_p42g22 at 15.601 kb on - strand, within HP15_p42g22 at 15.612 kb on + strand, within HP15_p42g22 at 15.615 kb on - strand, within HP15_p42g22 at 15.615 kb on - strand, within HP15_p42g22 at 15.692 kb on - strand, within HP15_p42g22 at 15.724 kb on - strand, within HP15_p42g22 at 15.800 kb on - strand, within HP15_p42g22 at 15.805 kb on - strand, within HP15_p42g22 at 15.851 kb on - strand, within HP15_p42g22
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 13,540 + HP15_p42g19 0.76 -1.4 13,565 + HP15_p42g19 0.79 +1.2 13,574 + HP15_p42g19 0.80 -1.1 13,623 - HP15_p42g19 0.87 -1.0 13,638 + HP15_p42g19 0.89 -0.9 13,764 + HP15_p42g20 0.11 +1.2 14,067 + HP15_p42g20 0.81 -0.6 14,483 - -0.2 14,514 - -0.1 14,638 - HP15_p42g21 0.38 +1.5 14,669 - HP15_p42g21 0.47 -0.4 14,671 + HP15_p42g21 0.47 -1.6 14,678 + HP15_p42g21 0.49 -2.0 14,764 - HP15_p42g21 0.72 -0.5 14,963 - -0.3 14,986 - -1.7 14,997 + -1.7 14,997 + -3.0 15,000 - -0.8 15,074 - -1.1 15,091 - -0.7 15,168 - HP15_p42g22 0.11 +0.4 15,191 - HP15_p42g22 0.12 -0.5 15,209 + HP15_p42g22 0.13 -2.0 15,217 - HP15_p42g22 0.13 +3.4 15,217 - HP15_p42g22 0.13 +0.8 15,222 - HP15_p42g22 0.13 +1.5 15,224 - HP15_p42g22 0.13 +2.0 15,375 - HP15_p42g22 0.20 -0.8 15,486 + HP15_p42g22 0.25 -1.7 15,491 + HP15_p42g22 0.25 -1.4 15,493 - HP15_p42g22 0.25 -0.7 15,596 - HP15_p42g22 0.30 -0.6 15,601 - HP15_p42g22 0.30 +0.4 15,601 - HP15_p42g22 0.30 +0.1 15,612 + HP15_p42g22 0.31 -0.2 15,615 - HP15_p42g22 0.31 -0.1 15,615 - HP15_p42g22 0.31 -1.5 15,692 - HP15_p42g22 0.34 +1.7 15,724 - HP15_p42g22 0.35 -0.4 15,800 - HP15_p42g22 0.39 +2.1 15,805 - HP15_p42g22 0.39 -0.7 15,851 - HP15_p42g22 0.41 -1.4
Or see this region's nucleotide sequence