Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4050 and HP15_4051 are separated by 71 nucleotides HP15_4051 and HP15_4052 are separated by 17 nucleotides
HP15_4050: HP15_4050 - sensory box/GGDEF family protein, at 4,283,991 to 4,286,258
_4050
HP15_4051: HP15_4051 - phenylacetic acid degradation-related protein, thioesterase superfamily, at 4,286,330 to 4,286,758
_4051
HP15_4052: HP15_4052 - response regulator, at 4,286,776 to 4,287,729
_4052
Position (kb)
4286
4287 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4285.332 kb on - strand, within HP15_4050 at 4285.334 kb on + strand, within HP15_4050 at 4285.337 kb on - strand, within HP15_4050 at 4285.362 kb on + strand, within HP15_4050 at 4285.373 kb on - strand, within HP15_4050 at 4285.426 kb on + strand, within HP15_4050 at 4285.484 kb on + strand, within HP15_4050 at 4285.497 kb on - strand, within HP15_4050 at 4285.525 kb on + strand, within HP15_4050 at 4285.533 kb on - strand, within HP15_4050 at 4285.612 kb on - strand, within HP15_4050 at 4285.759 kb on - strand, within HP15_4050 at 4286.078 kb on - strand at 4286.078 kb on - strand at 4286.078 kb on - strand at 4286.110 kb on - strand at 4286.151 kb on + strand at 4286.196 kb on + strand at 4286.621 kb on + strand, within HP15_4051 at 4286.629 kb on - strand, within HP15_4051 at 4286.637 kb on - strand, within HP15_4051 at 4286.651 kb on - strand, within HP15_4051 at 4286.826 kb on - strand at 4286.991 kb on + strand, within HP15_4052 at 4287.019 kb on + strand, within HP15_4052 at 4287.037 kb on - strand, within HP15_4052 at 4287.044 kb on + strand, within HP15_4052 at 4287.224 kb on - strand, within HP15_4052 at 4287.247 kb on + strand, within HP15_4052 at 4287.264 kb on + strand, within HP15_4052 at 4287.474 kb on + strand, within HP15_4052 at 4287.497 kb on + strand, within HP15_4052 at 4287.503 kb on + strand at 4287.521 kb on + strand, within HP15_4052 at 4287.539 kb on + strand, within HP15_4052 at 4287.547 kb on + strand, within HP15_4052 at 4287.583 kb on - strand, within HP15_4052 at 4287.616 kb on - strand, within HP15_4052 at 4287.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 4,285,332 - HP15_4050 0.59 -0.2 4,285,334 + HP15_4050 0.59 -0.5 4,285,337 - HP15_4050 0.59 -0.8 4,285,362 + HP15_4050 0.60 -0.2 4,285,373 - HP15_4050 0.61 -0.1 4,285,426 + HP15_4050 0.63 -1.8 4,285,484 + HP15_4050 0.66 +1.9 4,285,497 - HP15_4050 0.66 -0.9 4,285,525 + HP15_4050 0.68 -0.4 4,285,533 - HP15_4050 0.68 +0.7 4,285,612 - HP15_4050 0.71 +0.2 4,285,759 - HP15_4050 0.78 -1.7 4,286,078 - -1.7 4,286,078 - -0.3 4,286,078 - -0.6 4,286,110 - +1.7 4,286,151 + +0.1 4,286,196 + -0.3 4,286,621 + HP15_4051 0.68 +0.0 4,286,629 - HP15_4051 0.70 -0.8 4,286,637 - HP15_4051 0.72 -0.0 4,286,651 - HP15_4051 0.75 -0.4 4,286,826 - +1.2 4,286,991 + HP15_4052 0.23 -0.6 4,287,019 + HP15_4052 0.25 +1.3 4,287,037 - HP15_4052 0.27 -0.5 4,287,044 + HP15_4052 0.28 -0.8 4,287,224 - HP15_4052 0.47 +1.7 4,287,247 + HP15_4052 0.49 -0.4 4,287,264 + HP15_4052 0.51 +1.4 4,287,474 + HP15_4052 0.73 -0.8 4,287,497 + HP15_4052 0.76 +1.3 4,287,503 + -0.2 4,287,521 + HP15_4052 0.78 +0.4 4,287,539 + HP15_4052 0.80 -1.3 4,287,547 + HP15_4052 0.81 +2.4 4,287,583 - HP15_4052 0.85 -0.6 4,287,616 - HP15_4052 0.88 -0.3 4,287,651 - +1.9
Or see this region's nucleotide sequence