Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4009 and HP15_4010 are separated by 2 nucleotides HP15_4010 and HP15_4011 are separated by 68 nucleotides HP15_4011 and HP15_4012 are separated by 78 nucleotides HP15_4012 and HP15_4013 are separated by 70 nucleotides
HP15_4009: HP15_4009 - flagellar motor protein MotB, at 4,244,612 to 4,245,535
_4009
HP15_4010: HP15_4010 - flagellar motor protein PomA, at 4,245,538 to 4,246,308
_4010
HP15_4011: HP15_4011 - protein containing DUF1232, at 4,246,377 to 4,246,796
_4011
HP15_4012: HP15_4012 - conserved hypothetical protein, at 4,246,875 to 4,247,132
_4012
HP15_4013: HP15_4013 - DTW domain containing protein, at 4,247,203 to 4,247,709
_4013
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4244.583 kb on + strand at 4244.632 kb on + strand at 4244.734 kb on + strand, within HP15_4009 at 4244.792 kb on + strand, within HP15_4009 at 4244.909 kb on + strand, within HP15_4009 at 4244.988 kb on + strand, within HP15_4009 at 4245.140 kb on + strand, within HP15_4009 at 4245.243 kb on - strand, within HP15_4009 at 4245.308 kb on - strand, within HP15_4009 at 4245.341 kb on + strand, within HP15_4009 at 4245.375 kb on + strand, within HP15_4009 at 4245.431 kb on + strand, within HP15_4009 at 4245.618 kb on + strand, within HP15_4010 at 4245.638 kb on - strand, within HP15_4010 at 4245.683 kb on + strand, within HP15_4010 at 4245.693 kb on + strand, within HP15_4010 at 4245.757 kb on + strand, within HP15_4010 at 4245.815 kb on + strand, within HP15_4010 at 4245.861 kb on - strand, within HP15_4010 at 4245.988 kb on - strand, within HP15_4010 at 4246.139 kb on + strand, within HP15_4010 at 4246.445 kb on - strand, within HP15_4011 at 4246.458 kb on + strand, within HP15_4011 at 4246.543 kb on + strand, within HP15_4011 at 4246.551 kb on - strand, within HP15_4011 at 4246.694 kb on - strand, within HP15_4011 at 4246.696 kb on - strand, within HP15_4011 at 4246.802 kb on + strand at 4246.830 kb on + strand at 4246.836 kb on - strand at 4246.911 kb on + strand, within HP15_4012 at 4246.911 kb on + strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.983 kb on - strand, within HP15_4012 at 4247.036 kb on + strand, within HP15_4012 at 4247.044 kb on - strand, within HP15_4012 at 4247.066 kb on - strand, within HP15_4012 at 4247.114 kb on + strand at 4247.136 kb on - strand at 4247.221 kb on - strand at 4247.251 kb on + strand at 4247.295 kb on + strand, within HP15_4013 at 4247.295 kb on + strand, within HP15_4013
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 4,244,583 + +0.0 4,244,632 + +0.1 4,244,734 + HP15_4009 0.13 +1.4 4,244,792 + HP15_4009 0.19 +1.0 4,244,909 + HP15_4009 0.32 +1.6 4,244,988 + HP15_4009 0.41 +1.0 4,245,140 + HP15_4009 0.57 +0.5 4,245,243 - HP15_4009 0.68 -0.6 4,245,308 - HP15_4009 0.75 +0.6 4,245,341 + HP15_4009 0.79 +0.9 4,245,375 + HP15_4009 0.83 +0.5 4,245,431 + HP15_4009 0.89 +1.8 4,245,618 + HP15_4010 0.10 +2.0 4,245,638 - HP15_4010 0.13 +1.8 4,245,683 + HP15_4010 0.19 +1.7 4,245,693 + HP15_4010 0.20 +0.8 4,245,757 + HP15_4010 0.28 +0.9 4,245,815 + HP15_4010 0.36 -1.3 4,245,861 - HP15_4010 0.42 +0.9 4,245,988 - HP15_4010 0.58 +1.8 4,246,139 + HP15_4010 0.78 +1.8 4,246,445 - HP15_4011 0.16 -0.1 4,246,458 + HP15_4011 0.19 -0.9 4,246,543 + HP15_4011 0.40 +0.0 4,246,551 - HP15_4011 0.41 +1.5 4,246,694 - HP15_4011 0.75 -0.2 4,246,696 - HP15_4011 0.76 +0.3 4,246,802 + +1.3 4,246,830 + -1.8 4,246,836 - -1.2 4,246,911 + HP15_4012 0.14 -0.7 4,246,911 + HP15_4012 0.14 -1.1 4,246,919 - HP15_4012 0.17 -0.3 4,246,919 - HP15_4012 0.17 +1.1 4,246,919 - HP15_4012 0.17 +2.2 4,246,926 - HP15_4012 0.20 -2.0 4,246,926 - HP15_4012 0.20 -0.8 4,246,983 - HP15_4012 0.42 +1.5 4,247,036 + HP15_4012 0.62 -0.0 4,247,044 - HP15_4012 0.66 +1.9 4,247,066 - HP15_4012 0.74 -0.4 4,247,114 + -0.0 4,247,136 - +1.5 4,247,221 - -0.3 4,247,251 + +1.8 4,247,295 + HP15_4013 0.18 -1.3 4,247,295 + HP15_4013 0.18 +0.4
Or see this region's nucleotide sequence