Strain Fitness in Marinobacter adhaerens HP15 around HP15_3930

Experiment: monoculture; Experiment B, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3929 and HP15_3930 are separated by 39 nucleotidesHP15_3930 and HP15_3931 are separated by 25 nucleotidesHP15_3931 and HP15_3932 are separated by 72 nucleotides HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845 _3929 HP15_3930: HP15_3930 - putative two component system response regulator, at 4,159,885 to 4,160,151 _3930 HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458 _3931 HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130 _3932 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4158.975 kb on - strand, within HP15_3929at 4159.007 kb on - strand, within HP15_3929at 4159.021 kb on - strand, within HP15_3929at 4159.023 kb on + strand, within HP15_3929at 4159.090 kb on + strand, within HP15_3929at 4159.141 kb on + strand, within HP15_3929at 4159.141 kb on + strand, within HP15_3929at 4159.142 kb on + strand, within HP15_3929at 4159.149 kb on - strand, within HP15_3929at 4159.150 kb on - strand, within HP15_3929at 4159.179 kb on - strand, within HP15_3929at 4159.228 kb on + strand, within HP15_3929at 4159.257 kb on + strand, within HP15_3929at 4159.356 kb on + strand, within HP15_3929at 4159.364 kb on - strand, within HP15_3929at 4159.415 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.460 kb on + strand, within HP15_3929at 4159.463 kb on - strand, within HP15_3929at 4159.470 kb on + strand, within HP15_3929at 4159.482 kb on - strand, within HP15_3929at 4159.613 kb on + strand, within HP15_3929at 4159.654 kb on + strand, within HP15_3929at 4159.659 kb on - strand, within HP15_3929at 4159.745 kb on + strandat 4159.745 kb on + strandat 4159.745 kb on + strandat 4159.745 kb on + strandat 4159.753 kb on - strandat 4159.753 kb on - strandat 4159.753 kb on - strandat 4159.793 kb on + strandat 4160.059 kb on - strand, within HP15_3930at 4160.086 kb on - strand, within HP15_3930at 4160.114 kb on + strand, within HP15_3930at 4160.190 kb on + strandat 4160.193 kb on - strandat 4160.260 kb on + strand, within HP15_3931at 4160.426 kb on + strand, within HP15_3931at 4160.461 kb on - strandat 4160.590 kb on - strandat 4160.600 kb on + strand, within HP15_3932at 4160.702 kb on + strand, within HP15_3932at 4160.814 kb on + strand, within HP15_3932at 4160.839 kb on + strand, within HP15_3932at 4160.839 kb on + strand, within HP15_3932at 4160.935 kb on + strand, within HP15_3932at 4161.020 kb on + strand, within HP15_3932

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
remove
4,158,975 - HP15_3929 0.27 -0.8
4,159,007 - HP15_3929 0.30 +2.0
4,159,021 - HP15_3929 0.31 -0.1
4,159,023 + HP15_3929 0.31 +1.7
4,159,090 + HP15_3929 0.37 -0.9
4,159,141 + HP15_3929 0.41 +0.3
4,159,141 + HP15_3929 0.41 -0.1
4,159,142 + HP15_3929 0.41 -0.8
4,159,149 - HP15_3929 0.42 -0.5
4,159,150 - HP15_3929 0.42 +1.7
4,159,179 - HP15_3929 0.44 +1.2
4,159,228 + HP15_3929 0.48 -1.3
4,159,257 + HP15_3929 0.51 +0.2
4,159,356 + HP15_3929 0.59 +0.2
4,159,364 - HP15_3929 0.60 +1.3
4,159,415 + HP15_3929 0.64 +0.7
4,159,437 + HP15_3929 0.66 -0.3
4,159,437 + HP15_3929 0.66 -0.3
4,159,437 + HP15_3929 0.66 -0.5
4,159,445 - HP15_3929 0.66 -1.4
4,159,445 - HP15_3929 0.66 -0.1
4,159,445 - HP15_3929 0.66 -0.6
4,159,445 - HP15_3929 0.66 -0.5
4,159,445 - HP15_3929 0.66 +0.1
4,159,460 + HP15_3929 0.68 +1.1
4,159,463 - HP15_3929 0.68 -1.5
4,159,470 + HP15_3929 0.69 +0.5
4,159,482 - HP15_3929 0.70 -0.7
4,159,613 + HP15_3929 0.81 -1.2
4,159,654 + HP15_3929 0.84 +1.0
4,159,659 - HP15_3929 0.84 -0.9
4,159,745 + +1.6
4,159,745 + -0.2
4,159,745 + +0.6
4,159,745 + -1.7
4,159,753 - -0.3
4,159,753 - +0.7
4,159,753 - -2.5
4,159,793 + -0.0
4,160,059 - HP15_3930 0.65 -0.4
4,160,086 - HP15_3930 0.75 -0.5
4,160,114 + HP15_3930 0.86 -0.3
4,160,190 + -0.5
4,160,193 - +2.9
4,160,260 + HP15_3931 0.29 +0.0
4,160,426 + HP15_3931 0.88 -0.8
4,160,461 - +0.5
4,160,590 - +0.3
4,160,600 + HP15_3932 0.12 -0.5
4,160,702 + HP15_3932 0.28 -0.4
4,160,814 + HP15_3932 0.47 -1.4
4,160,839 + HP15_3932 0.51 +0.9
4,160,839 + HP15_3932 0.51 -1.0
4,160,935 + HP15_3932 0.67 +1.1
4,161,020 + HP15_3932 0.81 +1.3

Or see this region's nucleotide sequence