Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3914 and HP15_3915 are separated by 110 nucleotides HP15_3915 and HP15_3916 are separated by 166 nucleotides
HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856
_3914
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
HP15_3916: HP15_3916 - sodium-dependent transporter family protein, at 4,145,750 to 4,147,147
_3916
Position (kb)
4143
4144
4145
4146 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4143.099 kb on + strand, within HP15_3914 at 4143.154 kb on - strand, within HP15_3914 at 4143.207 kb on - strand, within HP15_3914 at 4143.234 kb on + strand, within HP15_3914 at 4143.242 kb on + strand, within HP15_3914 at 4143.273 kb on + strand, within HP15_3914 at 4143.281 kb on - strand, within HP15_3914 at 4143.480 kb on - strand, within HP15_3914 at 4143.593 kb on - strand, within HP15_3914 at 4143.627 kb on + strand, within HP15_3914 at 4143.868 kb on + strand at 4143.868 kb on + strand at 4143.876 kb on - strand at 4143.876 kb on - strand at 4143.989 kb on - strand at 4144.025 kb on + strand at 4144.089 kb on - strand at 4144.197 kb on + strand, within HP15_3915 at 4144.231 kb on - strand, within HP15_3915 at 4144.238 kb on - strand, within HP15_3915 at 4144.240 kb on + strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.281 kb on + strand, within HP15_3915 at 4144.364 kb on + strand, within HP15_3915 at 4144.504 kb on - strand, within HP15_3915 at 4144.538 kb on + strand, within HP15_3915 at 4144.565 kb on + strand, within HP15_3915 at 4145.011 kb on + strand, within HP15_3915 at 4145.162 kb on + strand, within HP15_3915 at 4145.281 kb on + strand, within HP15_3915 at 4145.313 kb on - strand, within HP15_3915 at 4145.360 kb on + strand, within HP15_3915 at 4145.365 kb on + strand, within HP15_3915 at 4145.754 kb on - strand at 4145.882 kb on - strand at 4146.128 kb on - strand, within HP15_3916 at 4146.224 kb on - strand, within HP15_3916 at 4146.304 kb on + strand, within HP15_3916 at 4146.440 kb on + strand, within HP15_3916 at 4146.472 kb on - strand, within HP15_3916 at 4146.507 kb on + strand, within HP15_3916
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 4,143,099 + HP15_3914 0.14 +1.6 4,143,154 - HP15_3914 0.21 -1.0 4,143,207 - HP15_3914 0.27 -0.5 4,143,234 + HP15_3914 0.30 +0.3 4,143,242 + HP15_3914 0.31 +1.8 4,143,273 + HP15_3914 0.34 -0.7 4,143,281 - HP15_3914 0.35 +2.3 4,143,480 - HP15_3914 0.57 -0.1 4,143,593 - HP15_3914 0.70 +2.9 4,143,627 + HP15_3914 0.74 +0.6 4,143,868 + -0.0 4,143,868 + -0.4 4,143,876 - -1.0 4,143,876 - -0.2 4,143,989 - -0.1 4,144,025 + +0.1 4,144,089 - +1.1 4,144,197 + HP15_3915 0.14 +1.2 4,144,231 - HP15_3915 0.16 +2.0 4,144,238 - HP15_3915 0.17 +0.1 4,144,240 + HP15_3915 0.17 -1.3 4,144,248 - HP15_3915 0.17 -2.1 4,144,248 - HP15_3915 0.17 +0.2 4,144,281 + HP15_3915 0.19 -0.4 4,144,364 + HP15_3915 0.25 +0.6 4,144,504 - HP15_3915 0.33 -1.2 4,144,538 + HP15_3915 0.35 +2.3 4,144,565 + HP15_3915 0.37 -0.5 4,145,011 + HP15_3915 0.65 -0.1 4,145,162 + HP15_3915 0.74 +3.0 4,145,281 + HP15_3915 0.81 +1.9 4,145,313 - HP15_3915 0.83 +1.5 4,145,360 + HP15_3915 0.86 +2.2 4,145,365 + HP15_3915 0.86 +2.7 4,145,754 - -1.0 4,145,882 - -0.2 4,146,128 - HP15_3916 0.27 +2.0 4,146,224 - HP15_3916 0.34 -0.2 4,146,304 + HP15_3916 0.40 -0.2 4,146,440 + HP15_3916 0.49 +0.6 4,146,472 - HP15_3916 0.52 -1.0 4,146,507 + HP15_3916 0.54 -0.8
Or see this region's nucleotide sequence