Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3744 and HP15_3745 are separated by 418 nucleotides HP15_3745 and HP15_3746 are separated by 70 nucleotides
HP15_3744: HP15_3744 - peptide deformylase, at 3,966,442 to 3,966,945
_3744
HP15_3745: HP15_3745 - protein containing LysM domain, at 3,967,364 to 3,968,380
_3745
HP15_3746: HP15_3746 - DNA protecting protein DprA, at 3,968,451 to 3,969,593
_3746
Position (kb)
3967
3968
3969 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3966.409 kb on - strand at 3966.409 kb on - strand at 3966.457 kb on - strand at 3966.962 kb on - strand at 3967.017 kb on + strand at 3967.025 kb on - strand at 3967.027 kb on - strand at 3967.035 kb on - strand at 3967.239 kb on - strand at 3967.316 kb on + strand at 3967.354 kb on + strand at 3967.362 kb on - strand at 3967.381 kb on - strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.402 kb on + strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.410 kb on - strand at 3967.456 kb on + strand at 3967.464 kb on - strand at 3967.474 kb on + strand, within HP15_3745 at 3967.474 kb on + strand, within HP15_3745 at 3967.484 kb on + strand, within HP15_3745 at 3967.576 kb on - strand, within HP15_3745 at 3967.608 kb on - strand, within HP15_3745 at 3967.626 kb on - strand, within HP15_3745 at 3967.674 kb on + strand, within HP15_3745 at 3967.751 kb on - strand, within HP15_3745 at 3967.751 kb on - strand, within HP15_3745 at 3967.755 kb on + strand, within HP15_3745 at 3967.763 kb on - strand, within HP15_3745 at 3967.793 kb on + strand, within HP15_3745 at 3967.801 kb on - strand, within HP15_3745 at 3967.815 kb on - strand, within HP15_3745 at 3967.923 kb on + strand, within HP15_3745 at 3967.923 kb on + strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.931 kb on - strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.938 kb on + strand, within HP15_3745 at 3967.946 kb on - strand, within HP15_3745 at 3967.976 kb on + strand, within HP15_3745 at 3967.988 kb on + strand, within HP15_3745 at 3967.991 kb on - strand, within HP15_3745 at 3967.998 kb on + strand, within HP15_3745 at 3968.001 kb on - strand, within HP15_3745 at 3968.056 kb on + strand, within HP15_3745 at 3968.138 kb on + strand, within HP15_3745 at 3968.181 kb on + strand, within HP15_3745 at 3968.215 kb on - strand, within HP15_3745 at 3968.258 kb on + strand, within HP15_3745 at 3968.301 kb on - strand at 3968.322 kb on + strand at 3968.406 kb on + strand at 3968.410 kb on + strand at 3968.500 kb on + strand at 3968.514 kb on - strand at 3968.514 kb on - strand at 3968.580 kb on - strand, within HP15_3746 at 3968.619 kb on + strand, within HP15_3746 at 3968.675 kb on - strand, within HP15_3746 at 3968.709 kb on + strand, within HP15_3746 at 3968.709 kb on + strand, within HP15_3746 at 3968.717 kb on - strand, within HP15_3746 at 3968.717 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.742 kb on - strand, within HP15_3746 at 3968.744 kb on + strand, within HP15_3746 at 3968.745 kb on + strand, within HP15_3746 at 3968.766 kb on + strand, within HP15_3746 at 3968.772 kb on + strand, within HP15_3746 at 3968.842 kb on - strand, within HP15_3746 at 3968.901 kb on - strand, within HP15_3746 at 3968.941 kb on - strand, within HP15_3746 at 3968.946 kb on - strand, within HP15_3746 at 3968.967 kb on + strand, within HP15_3746 at 3968.977 kb on - strand, within HP15_3746 at 3969.000 kb on - strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.008 kb on + strand, within HP15_3746 at 3969.092 kb on + strand, within HP15_3746 at 3969.092 kb on + strand, within HP15_3746 at 3969.100 kb on - strand, within HP15_3746 at 3969.100 kb on - strand, within HP15_3746 at 3969.135 kb on + strand, within HP15_3746 at 3969.173 kb on + strand, within HP15_3746 at 3969.176 kb on - strand, within HP15_3746 at 3969.212 kb on - strand, within HP15_3746 at 3969.253 kb on + strand, within HP15_3746 at 3969.254 kb on - strand, within HP15_3746 at 3969.254 kb on - strand, within HP15_3746 at 3969.256 kb on - strand, within HP15_3746 at 3969.261 kb on - strand, within HP15_3746 at 3969.310 kb on + strand, within HP15_3746 at 3969.318 kb on - strand, within HP15_3746
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 3,966,409 - -2.1 3,966,409 - -0.2 3,966,457 - +2.3 3,966,962 - +1.4 3,967,017 + -3.1 3,967,025 - +2.0 3,967,027 - -0.5 3,967,035 - -1.7 3,967,239 - +1.4 3,967,316 + +3.6 3,967,354 + +0.3 3,967,362 - -2.2 3,967,381 - -0.4 3,967,402 + +1.8 3,967,402 + -0.9 3,967,402 + -0.8 3,967,402 + -0.2 3,967,402 + +0.7 3,967,410 - +0.1 3,967,410 - -1.2 3,967,410 - -0.3 3,967,410 - -0.1 3,967,410 - +2.1 3,967,410 - -2.5 3,967,410 - +0.6 3,967,456 + +2.0 3,967,464 - +2.1 3,967,474 + HP15_3745 0.11 -0.5 3,967,474 + HP15_3745 0.11 -0.1 3,967,484 + HP15_3745 0.12 -0.0 3,967,576 - HP15_3745 0.21 +1.6 3,967,608 - HP15_3745 0.24 +2.1 3,967,626 - HP15_3745 0.26 -0.1 3,967,674 + HP15_3745 0.30 -0.2 3,967,751 - HP15_3745 0.38 -0.6 3,967,751 - HP15_3745 0.38 +0.4 3,967,755 + HP15_3745 0.38 +0.9 3,967,763 - HP15_3745 0.39 +1.7 3,967,793 + HP15_3745 0.42 +1.2 3,967,801 - HP15_3745 0.43 +1.5 3,967,815 - HP15_3745 0.44 +0.7 3,967,923 + HP15_3745 0.55 +2.2 3,967,923 + HP15_3745 0.55 -0.3 3,967,931 - HP15_3745 0.56 +1.5 3,967,931 - HP15_3745 0.56 +1.8 3,967,931 - HP15_3745 0.56 +1.3 3,967,931 - HP15_3745 0.56 -0.4 3,967,931 - HP15_3745 0.56 +0.4 3,967,931 - HP15_3745 0.56 -1.2 3,967,931 - HP15_3745 0.56 -3.4 3,967,931 - HP15_3745 0.56 +4.0 3,967,931 - HP15_3745 0.56 +1.9 3,967,938 + HP15_3745 0.56 +1.8 3,967,938 + HP15_3745 0.56 -0.8 3,967,938 + HP15_3745 0.56 +2.4 3,967,946 - HP15_3745 0.57 -0.0 3,967,976 + HP15_3745 0.60 +0.1 3,967,988 + HP15_3745 0.61 -0.2 3,967,991 - HP15_3745 0.62 -1.6 3,967,998 + HP15_3745 0.62 +1.8 3,968,001 - HP15_3745 0.63 -0.2 3,968,056 + HP15_3745 0.68 +1.8 3,968,138 + HP15_3745 0.76 +1.1 3,968,181 + HP15_3745 0.80 -0.7 3,968,215 - HP15_3745 0.84 +1.6 3,968,258 + HP15_3745 0.88 +2.3 3,968,301 - -0.1 3,968,322 + +1.7 3,968,406 + -1.2 3,968,410 + -0.5 3,968,500 + -0.7 3,968,514 - +1.5 3,968,514 - +2.0 3,968,580 - HP15_3746 0.11 +0.4 3,968,619 + HP15_3746 0.15 -1.1 3,968,675 - HP15_3746 0.20 +2.3 3,968,709 + HP15_3746 0.23 -0.9 3,968,709 + HP15_3746 0.23 +1.3 3,968,717 - HP15_3746 0.23 +0.0 3,968,717 - HP15_3746 0.23 +1.0 3,968,742 - HP15_3746 0.25 -1.7 3,968,742 - HP15_3746 0.25 +0.7 3,968,742 - HP15_3746 0.25 -2.2 3,968,744 + HP15_3746 0.26 -0.7 3,968,745 + HP15_3746 0.26 -0.8 3,968,766 + HP15_3746 0.28 -0.7 3,968,772 + HP15_3746 0.28 +2.0 3,968,842 - HP15_3746 0.34 +0.1 3,968,901 - HP15_3746 0.39 -0.1 3,968,941 - HP15_3746 0.43 +1.8 3,968,946 - HP15_3746 0.43 -0.8 3,968,967 + HP15_3746 0.45 +1.4 3,968,977 - HP15_3746 0.46 -2.4 3,969,000 - HP15_3746 0.48 +0.3 3,969,008 + HP15_3746 0.49 -2.2 3,969,008 + HP15_3746 0.49 -0.7 3,969,008 + HP15_3746 0.49 -1.0 3,969,092 + HP15_3746 0.56 +1.6 3,969,092 + HP15_3746 0.56 -0.2 3,969,100 - HP15_3746 0.57 +1.7 3,969,100 - HP15_3746 0.57 +3.0 3,969,135 + HP15_3746 0.60 -0.4 3,969,173 + HP15_3746 0.63 -0.2 3,969,176 - HP15_3746 0.63 -0.7 3,969,212 - HP15_3746 0.67 +1.4 3,969,253 + HP15_3746 0.70 -0.9 3,969,254 - HP15_3746 0.70 +0.1 3,969,254 - HP15_3746 0.70 -1.3 3,969,256 - HP15_3746 0.70 +1.8 3,969,261 - HP15_3746 0.71 +0.8 3,969,310 + HP15_3746 0.75 -1.4 3,969,318 - HP15_3746 0.76 +0.4
Or see this region's nucleotide sequence