Strain Fitness in Marinobacter adhaerens HP15 around HP15_3706

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3705 and HP15_3706 are separated by 130 nucleotidesHP15_3706 and HP15_3707 are separated by 100 nucleotides HP15_3705: HP15_3705 - DNA replication and repair protein recF, at 3,910,025 to 3,911,152 _3705 HP15_3706: HP15_3706 - DNA gyrase subunit B-like protein, at 3,911,283 to 3,913,622 _3706 HP15_3707: HP15_3707 - uncharacterized conserved protein UCP028137, membrane, at 3,913,723 to 3,914,487 _3707 Position (kb) 3911 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1at 3910.345 kb on + strand, within HP15_3705at 3910.410 kb on + strand, within HP15_3705at 3910.574 kb on + strand, within HP15_3705at 3910.806 kb on + strand, within HP15_3705at 3911.019 kb on + strand, within HP15_3705at 3911.080 kb on + strandat 3911.080 kb on + strandat 3911.092 kb on + strandat 3911.192 kb on + strandat 3914.613 kb on + strandat 3914.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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3,910,345 + HP15_3705 0.28 -0.4
3,910,410 + HP15_3705 0.34 -0.4
3,910,574 + HP15_3705 0.49 -1.2
3,910,806 + HP15_3705 0.69 -1.9
3,911,019 + HP15_3705 0.88 -0.6
3,911,080 + -2.5
3,911,080 + -0.4
3,911,092 + -0.0
3,911,192 + -1.6
3,914,613 + -1.3
3,914,622 - -0.6

Or see this region's nucleotide sequence