Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA2 and HP15_rRNA3 are separated by 99 nucleotides HP15_rRNA3 and HP15_359 are separated by 318 nucleotides HP15_359 and HP15_360 are separated by 10 nucleotides
HP15_rRNA2: HP15_rRNA2 - 23S ribosomal RNA, at 356,596 to 359,487
_rRNA2
HP15_rRNA3: HP15_rRNA3 - 5S ribosomal RNA, at 359,587 to 359,700
_rRNA3
HP15_359: HP15_359 - conserved hypothetical protein, at 360,019 to 361,131
_359
HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221
_360
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 359.995 kb on - strand at 360.034 kb on + strand at 360.034 kb on + strand at 360.042 kb on - strand at 360.081 kb on + strand at 360.091 kb on + strand at 360.091 kb on + strand at 360.100 kb on - strand at 360.407 kb on + strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.413 kb on - strand, within HP15_359 at 360.447 kb on - strand, within HP15_359 at 360.489 kb on - strand, within HP15_359 at 360.505 kb on - strand, within HP15_359 at 360.540 kb on - strand, within HP15_359 at 360.546 kb on + strand, within HP15_359 at 360.547 kb on - strand, within HP15_359 at 360.700 kb on - strand, within HP15_359 at 360.729 kb on + strand, within HP15_359 at 360.807 kb on + strand, within HP15_359 at 360.885 kb on + strand, within HP15_359 at 360.893 kb on - strand, within HP15_359 at 360.960 kb on + strand, within HP15_359 at 361.043 kb on + strand at 361.128 kb on - strand at 361.133 kb on - strand at 361.155 kb on + strand at 361.213 kb on - strand at 361.220 kb on + strand at 361.246 kb on - strand at 361.290 kb on + strand, within HP15_360 at 361.290 kb on + strand, within HP15_360 at 361.379 kb on + strand, within HP15_360 at 361.463 kb on - strand, within HP15_360 at 361.487 kb on + strand, within HP15_360 at 361.550 kb on + strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.591 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.609 kb on + strand, within HP15_360 at 361.640 kb on - strand, within HP15_360 at 361.704 kb on - strand, within HP15_360 at 361.709 kb on - strand at 361.713 kb on + strand, within HP15_360 at 362.023 kb on + strand, within HP15_360 at 362.093 kb on + strand, within HP15_360
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 359,995 - +1.9 360,034 + +1.1 360,034 + -1.2 360,042 - -0.9 360,081 + -2.2 360,091 + +2.2 360,091 + +3.5 360,100 - -1.0 360,407 + HP15_359 0.35 -1.9 360,413 - HP15_359 0.35 -0.5 360,413 - HP15_359 0.35 +0.6 360,413 - HP15_359 0.35 -1.1 360,447 - HP15_359 0.38 +2.4 360,489 - HP15_359 0.42 -0.1 360,505 - HP15_359 0.44 +0.8 360,540 - HP15_359 0.47 -1.6 360,546 + HP15_359 0.47 +2.3 360,547 - HP15_359 0.47 -0.5 360,700 - HP15_359 0.61 +2.6 360,729 + HP15_359 0.64 +2.2 360,807 + HP15_359 0.71 -0.8 360,885 + HP15_359 0.78 +2.0 360,893 - HP15_359 0.79 +0.4 360,960 + HP15_359 0.85 +1.8 361,043 + +2.0 361,128 - +3.0 361,133 - +2.2 361,155 + +1.8 361,213 - -0.5 361,220 + +0.1 361,246 - +0.5 361,290 + HP15_360 0.14 +4.3 361,290 + HP15_360 0.14 +0.9 361,379 + HP15_360 0.22 +1.2 361,463 - HP15_360 0.30 +1.8 361,487 + HP15_360 0.32 -1.7 361,550 + HP15_360 0.38 -0.8 361,584 - HP15_360 0.41 +3.9 361,584 - HP15_360 0.41 -0.2 361,591 + HP15_360 0.42 +0.2 361,592 + HP15_360 0.42 +0.2 361,592 + HP15_360 0.42 +1.9 361,592 + HP15_360 0.42 -0.4 361,609 + HP15_360 0.43 +0.4 361,640 - HP15_360 0.46 +2.0 361,704 - HP15_360 0.52 -1.2 361,709 - +0.1 361,713 + HP15_360 0.53 +0.6 362,023 + HP15_360 0.82 -0.0 362,093 + HP15_360 0.88 -0.8
Or see this region's nucleotide sequence