Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3245 and HP15_3246 are separated by 61 nucleotides HP15_3246 and HP15_3247 are separated by 145 nucleotides
HP15_3245: HP15_3245 - hyaluronidase, at 3,398,863 to 3,399,987
_3245
HP15_3246: HP15_3246 - ATPase, at 3,400,049 to 3,400,507
_3246
HP15_3247: HP15_3247 - twin-arginine translocation pathway signal, at 3,400,653 to 3,401,729
_3247
Position (kb)
3400
3401 Strain fitness (log2 ratio)
-1
0
1
2 at 3399.124 kb on - strand, within HP15_3245 at 3400.124 kb on - strand, within HP15_3246 at 3400.161 kb on - strand, within HP15_3246 at 3400.163 kb on + strand, within HP15_3246 at 3400.198 kb on + strand, within HP15_3246 at 3400.287 kb on + strand, within HP15_3246 at 3400.288 kb on + strand, within HP15_3246 at 3400.288 kb on + strand, within HP15_3246 at 3400.300 kb on + strand, within HP15_3246 at 3400.308 kb on - strand, within HP15_3246 at 3400.369 kb on + strand, within HP15_3246 at 3400.454 kb on - strand, within HP15_3246 at 3400.456 kb on + strand, within HP15_3246 at 3400.456 kb on + strand, within HP15_3246 at 3400.470 kb on - strand at 3400.623 kb on - strand at 3400.661 kb on - strand at 3400.663 kb on + strand at 3400.709 kb on - strand at 3400.898 kb on + strand, within HP15_3247 at 3400.906 kb on - strand, within HP15_3247 at 3400.911 kb on - strand, within HP15_3247 at 3400.921 kb on - strand, within HP15_3247 at 3400.935 kb on + strand, within HP15_3247 at 3401.114 kb on - strand, within HP15_3247 at 3401.114 kb on - strand, within HP15_3247 at 3401.243 kb on + strand, within HP15_3247 at 3401.243 kb on + strand, within HP15_3247 at 3401.251 kb on - strand, within HP15_3247 at 3401.253 kb on + strand, within HP15_3247 at 3401.277 kb on - strand, within HP15_3247 at 3401.293 kb on + strand, within HP15_3247 at 3401.293 kb on + strand, within HP15_3247 at 3401.354 kb on + strand, within HP15_3247
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 3,399,124 - HP15_3245 0.23 +1.2 3,400,124 - HP15_3246 0.16 +0.8 3,400,161 - HP15_3246 0.24 -0.5 3,400,163 + HP15_3246 0.25 +0.2 3,400,198 + HP15_3246 0.32 +0.6 3,400,287 + HP15_3246 0.52 -0.2 3,400,288 + HP15_3246 0.52 -1.4 3,400,288 + HP15_3246 0.52 -1.0 3,400,300 + HP15_3246 0.55 +2.6 3,400,308 - HP15_3246 0.56 +0.1 3,400,369 + HP15_3246 0.70 -1.4 3,400,454 - HP15_3246 0.88 -0.8 3,400,456 + HP15_3246 0.89 -0.7 3,400,456 + HP15_3246 0.89 -0.8 3,400,470 - -0.5 3,400,623 - +1.8 3,400,661 - +1.5 3,400,663 + -0.2 3,400,709 - +1.4 3,400,898 + HP15_3247 0.23 -1.1 3,400,906 - HP15_3247 0.23 -0.1 3,400,911 - HP15_3247 0.24 -0.1 3,400,921 - HP15_3247 0.25 +0.5 3,400,935 + HP15_3247 0.26 -1.5 3,401,114 - HP15_3247 0.43 +2.4 3,401,114 - HP15_3247 0.43 -1.5 3,401,243 + HP15_3247 0.55 -1.2 3,401,243 + HP15_3247 0.55 +1.7 3,401,251 - HP15_3247 0.56 -0.1 3,401,253 + HP15_3247 0.56 +0.1 3,401,277 - HP15_3247 0.58 -0.1 3,401,293 + HP15_3247 0.59 -0.6 3,401,293 + HP15_3247 0.59 -1.0 3,401,354 + HP15_3247 0.65 -0.8
Or see this region's nucleotide sequence