Strain Fitness in Marinobacter adhaerens HP15 around HP15_29

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_28 and HP15_29 are separated by 249 nucleotidesHP15_29 and HP15_30 are separated by 225 nucleotidesHP15_30 and HP15_31 are separated by 52 nucleotides HP15_28: HP15_28 - major facilitator superfamily MFS_1, at 32,510 to 33,784 _28 HP15_29: HP15_29 - methyl-accepting chemotaxis sensory transducer, at 34,034 to 35,599 _29 HP15_30: HP15_30 - dioxygenase DitA ferredoxin component-like protein, at 35,825 to 35,959 _30 HP15_31: HP15_31 - short-chain dehydrogenase/reductase SDR, at 36,012 to 36,770 _31 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 33.098 kb on + strand, within HP15_28at 33.106 kb on - strand, within HP15_28at 33.114 kb on - strand, within HP15_28at 33.173 kb on - strand, within HP15_28at 33.181 kb on + strand, within HP15_28at 33.239 kb on + strand, within HP15_28at 33.315 kb on + strand, within HP15_28at 33.315 kb on + strand, within HP15_28at 33.448 kb on + strand, within HP15_28at 33.456 kb on + strand, within HP15_28at 33.489 kb on - strand, within HP15_28at 33.491 kb on + strand, within HP15_28at 33.499 kb on - strand, within HP15_28at 33.499 kb on - strand, within HP15_28at 33.557 kb on - strand, within HP15_28at 33.573 kb on - strand, within HP15_28at 33.611 kb on + strand, within HP15_28at 33.619 kb on - strand, within HP15_28at 33.670 kb on + strandat 33.670 kb on + strandat 33.670 kb on + strandat 33.686 kb on + strandat 33.686 kb on + strandat 33.712 kb on - strandat 33.774 kb on + strandat 33.780 kb on + strandat 33.788 kb on - strandat 33.788 kb on - strandat 33.818 kb on + strandat 33.821 kb on - strandat 33.826 kb on - strandat 33.835 kb on - strandat 33.934 kb on + strandat 33.935 kb on + strandat 33.942 kb on - strandat 33.967 kb on + strandat 33.972 kb on + strandat 33.983 kb on + strandat 33.991 kb on - strandat 34.037 kb on - strandat 34.037 kb on - strandat 34.105 kb on + strandat 34.116 kb on + strandat 34.116 kb on + strandat 34.124 kb on - strandat 34.124 kb on - strandat 34.150 kb on + strandat 34.150 kb on + strandat 34.187 kb on + strandat 34.187 kb on + strandat 34.227 kb on - strand, within HP15_29at 34.262 kb on - strand, within HP15_29at 34.384 kb on - strand, within HP15_29at 34.408 kb on - strand, within HP15_29at 34.417 kb on + strand, within HP15_29at 34.421 kb on + strand, within HP15_29at 34.421 kb on + strand, within HP15_29at 34.436 kb on + strand, within HP15_29at 34.436 kb on + strand, within HP15_29at 34.444 kb on - strand, within HP15_29at 34.457 kb on + strand, within HP15_29at 34.465 kb on - strand, within HP15_29at 34.465 kb on - strand, within HP15_29at 34.487 kb on + strand, within HP15_29at 34.521 kb on - strand, within HP15_29at 34.521 kb on - strand, within HP15_29at 34.553 kb on - strand, within HP15_29at 34.640 kb on - strand, within HP15_29at 34.653 kb on + strand, within HP15_29at 34.653 kb on + strand, within HP15_29at 34.661 kb on - strand, within HP15_29at 34.716 kb on - strand, within HP15_29at 34.754 kb on - strand, within HP15_29at 34.790 kb on + strand, within HP15_29at 34.790 kb on + strand, within HP15_29at 34.805 kb on - strand, within HP15_29at 34.815 kb on - strand, within HP15_29at 34.889 kb on + strand, within HP15_29at 34.892 kb on - strand, within HP15_29at 34.897 kb on - strand, within HP15_29at 34.944 kb on - strand, within HP15_29at 34.949 kb on + strand, within HP15_29at 34.957 kb on - strand, within HP15_29at 34.957 kb on - strand, within HP15_29at 34.959 kb on + strand, within HP15_29at 34.968 kb on + strand, within HP15_29at 34.969 kb on + strand, within HP15_29at 34.969 kb on + strand, within HP15_29at 34.976 kb on - strand, within HP15_29at 34.976 kb on - strand, within HP15_29at 34.976 kb on - strand, within HP15_29at 34.977 kb on - strand, within HP15_29at 34.997 kb on - strand, within HP15_29at 35.073 kb on + strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.102 kb on - strand, within HP15_29at 35.104 kb on + strand, within HP15_29at 35.112 kb on - strand, within HP15_29at 35.120 kb on + strand, within HP15_29at 35.171 kb on + strand, within HP15_29at 35.179 kb on - strand, within HP15_29at 35.179 kb on - strand, within HP15_29at 35.196 kb on - strand, within HP15_29at 35.196 kb on - strand, within HP15_29at 35.335 kb on + strand, within HP15_29at 35.349 kb on - strand, within HP15_29at 35.379 kb on - strand, within HP15_29at 35.397 kb on + strand, within HP15_29at 35.472 kb on + strandat 35.523 kb on - strandat 35.540 kb on - strandat 35.540 kb on - strandat 35.564 kb on - strandat 35.587 kb on + strandat 35.603 kb on + strandat 35.611 kb on - strandat 35.637 kb on + strandat 35.637 kb on + strandat 35.825 kb on - strandat 35.859 kb on - strand, within HP15_30at 35.899 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.914 kb on + strand, within HP15_30at 35.917 kb on - strand, within HP15_30at 35.922 kb on - strand, within HP15_30at 35.954 kb on + strandat 36.010 kb on - strandat 36.018 kb on - strandat 36.060 kb on + strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.210 kb on - strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.230 kb on - strand, within HP15_31at 36.262 kb on + strand, within HP15_31at 36.355 kb on + strand, within HP15_31at 36.427 kb on + strand, within HP15_31at 36.455 kb on + strand, within HP15_31at 36.462 kb on - strand, within HP15_31at 36.496 kb on - strand, within HP15_31at 36.536 kb on - strand, within HP15_31at 36.561 kb on + strand, within HP15_31at 36.580 kb on + strand, within HP15_31at 36.595 kb on + strand, within HP15_31

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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33,098 + HP15_28 0.46 -2.6
33,106 - HP15_28 0.47 -0.6
33,114 - HP15_28 0.47 +1.9
33,173 - HP15_28 0.52 +1.8
33,181 + HP15_28 0.53 +1.0
33,239 + HP15_28 0.57 +2.0
33,315 + HP15_28 0.63 -0.5
33,315 + HP15_28 0.63 +1.6
33,448 + HP15_28 0.74 -0.6
33,456 + HP15_28 0.74 +0.4
33,489 - HP15_28 0.77 +0.7
33,491 + HP15_28 0.77 +2.0
33,499 - HP15_28 0.78 -0.2
33,499 - HP15_28 0.78 +1.6
33,557 - HP15_28 0.82 +1.7
33,573 - HP15_28 0.83 +0.8
33,611 + HP15_28 0.86 -0.3
33,619 - HP15_28 0.87 -0.6
33,670 + -0.2
33,670 + +1.7
33,670 + -0.1
33,686 + -0.3
33,686 + -0.8
33,712 - -0.5
33,774 + -1.0
33,780 + -1.3
33,788 - -0.7
33,788 - +0.6
33,818 + +1.7
33,821 - -0.2
33,826 - -1.1
33,835 - +1.2
33,934 + +1.3
33,935 + -0.3
33,942 - -1.3
33,967 + -0.6
33,972 + -0.7
33,983 + +1.8
33,991 - -0.3
34,037 - +1.8
34,037 - -0.5
34,105 + +1.6
34,116 + -0.0
34,116 + +1.9
34,124 - +1.0
34,124 - -0.4
34,150 + +0.9
34,150 + +1.2
34,187 + -0.3
34,187 + -0.4
34,227 - HP15_29 0.12 -1.2
34,262 - HP15_29 0.15 +1.3
34,384 - HP15_29 0.22 +1.7
34,408 - HP15_29 0.24 +1.2
34,417 + HP15_29 0.24 +1.8
34,421 + HP15_29 0.25 -0.4
34,421 + HP15_29 0.25 +2.5
34,436 + HP15_29 0.26 -1.3
34,436 + HP15_29 0.26 +1.5
34,444 - HP15_29 0.26 -0.2
34,457 + HP15_29 0.27 -1.0
34,465 - HP15_29 0.28 -0.2
34,465 - HP15_29 0.28 -0.2
34,487 + HP15_29 0.29 -2.1
34,521 - HP15_29 0.31 -0.2
34,521 - HP15_29 0.31 +0.6
34,553 - HP15_29 0.33 +2.2
34,640 - HP15_29 0.39 -0.5
34,653 + HP15_29 0.40 +0.1
34,653 + HP15_29 0.40 -0.7
34,661 - HP15_29 0.40 -0.0
34,716 - HP15_29 0.44 +1.1
34,754 - HP15_29 0.46 +2.2
34,790 + HP15_29 0.48 -0.8
34,790 + HP15_29 0.48 -0.9
34,805 - HP15_29 0.49 -1.5
34,815 - HP15_29 0.50 -0.7
34,889 + HP15_29 0.55 +2.0
34,892 - HP15_29 0.55 +0.4
34,897 - HP15_29 0.55 +1.0
34,944 - HP15_29 0.58 +0.6
34,949 + HP15_29 0.58 -1.4
34,957 - HP15_29 0.59 -0.2
34,957 - HP15_29 0.59 -0.5
34,959 + HP15_29 0.59 +3.1
34,968 + HP15_29 0.60 +2.7
34,969 + HP15_29 0.60 -0.1
34,969 + HP15_29 0.60 +1.6
34,976 - HP15_29 0.60 +0.5
34,976 - HP15_29 0.60 -1.4
34,976 - HP15_29 0.60 -1.3
34,977 - HP15_29 0.60 +1.9
34,997 - HP15_29 0.61 +2.2
35,073 + HP15_29 0.66 -0.1
35,081 - HP15_29 0.67 +1.4
35,081 - HP15_29 0.67 -0.1
35,081 - HP15_29 0.67 -0.3
35,102 - HP15_29 0.68 +0.5
35,104 + HP15_29 0.68 +0.2
35,112 - HP15_29 0.69 +1.5
35,120 + HP15_29 0.69 +0.2
35,171 + HP15_29 0.73 -0.0
35,179 - HP15_29 0.73 +0.7
35,179 - HP15_29 0.73 -0.2
35,196 - HP15_29 0.74 -1.0
35,196 - HP15_29 0.74 +1.5
35,335 + HP15_29 0.83 +2.3
35,349 - HP15_29 0.84 +2.1
35,379 - HP15_29 0.86 -0.3
35,397 + HP15_29 0.87 +1.7
35,472 + +0.0
35,523 - +0.9
35,540 - -1.7
35,540 - -0.6
35,564 - -0.5
35,587 + -0.3
35,603 + -0.6
35,611 - +1.5
35,637 + +1.7
35,637 + +1.0
35,825 - -0.6
35,859 - HP15_30 0.25 -0.8
35,899 + HP15_30 0.55 -0.6
35,909 + HP15_30 0.62 +1.5
35,909 + HP15_30 0.62 -0.5
35,914 + HP15_30 0.66 -0.9
35,917 - HP15_30 0.68 -0.7
35,922 - HP15_30 0.72 +1.4
35,954 + +1.5
36,010 - +0.8
36,018 - -0.3
36,060 + -0.3
36,068 - +1.4
36,068 - -2.3
36,068 - -0.7
36,068 - +1.7
36,210 - HP15_31 0.26 +1.0
36,211 + HP15_31 0.26 +0.4
36,211 + HP15_31 0.26 +1.0
36,219 - HP15_31 0.27 -0.6
36,219 - HP15_31 0.27 -2.5
36,230 - HP15_31 0.29 +1.5
36,262 + HP15_31 0.33 +0.4
36,355 + HP15_31 0.45 +1.4
36,427 + HP15_31 0.55 +2.0
36,455 + HP15_31 0.58 +1.1
36,462 - HP15_31 0.59 -0.3
36,496 - HP15_31 0.64 +0.8
36,536 - HP15_31 0.69 +1.5
36,561 + HP15_31 0.72 -1.6
36,580 + HP15_31 0.75 -0.5
36,595 + HP15_31 0.77 +1.0

Or see this region's nucleotide sequence