Strain Fitness in Marinobacter adhaerens HP15 around HP15_285

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_284 and HP15_285 are separated by 127 nucleotidesHP15_285 and HP15_286 are separated by 243 nucleotidesHP15_286 and HP15_287 are separated by 22 nucleotides HP15_284: HP15_284 - homoserine O-acetyltransferase, at 274,136 to 275,284 _284 HP15_285: HP15_285 - conserved hypothetical protein, at 275,412 to 277,376 _285 HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204 _286 HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060 _287 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 274.425 kb on - strand, within HP15_284at 274.573 kb on - strand, within HP15_284at 274.612 kb on + strand, within HP15_284at 274.612 kb on + strand, within HP15_284at 274.620 kb on - strand, within HP15_284at 274.786 kb on - strand, within HP15_284at 274.983 kb on - strand, within HP15_284at 275.026 kb on + strand, within HP15_284at 275.074 kb on - strand, within HP15_284at 275.365 kb on - strandat 275.365 kb on - strandat 275.365 kb on - strandat 275.418 kb on - strandat 275.624 kb on + strand, within HP15_285at 275.632 kb on - strand, within HP15_285at 275.699 kb on - strand, within HP15_285at 275.699 kb on - strand, within HP15_285at 275.851 kb on + strand, within HP15_285at 275.860 kb on - strand, within HP15_285at 275.993 kb on + strand, within HP15_285at 276.088 kb on + strand, within HP15_285at 276.132 kb on - strand, within HP15_285at 276.147 kb on + strand, within HP15_285at 276.180 kb on + strand, within HP15_285at 276.195 kb on + strand, within HP15_285at 276.198 kb on - strand, within HP15_285at 276.198 kb on - strand, within HP15_285at 276.203 kb on - strand, within HP15_285at 276.226 kb on - strand, within HP15_285at 276.246 kb on + strand, within HP15_285at 276.292 kb on + strand, within HP15_285at 276.310 kb on - strand, within HP15_285at 276.335 kb on - strand, within HP15_285at 276.435 kb on + strand, within HP15_285at 276.453 kb on - strand, within HP15_285at 276.530 kb on + strand, within HP15_285at 276.531 kb on - strand, within HP15_285at 276.535 kb on + strand, within HP15_285at 276.621 kb on - strand, within HP15_285at 276.666 kb on + strand, within HP15_285at 276.666 kb on + strand, within HP15_285at 276.674 kb on - strand, within HP15_285at 276.679 kb on + strand, within HP15_285at 276.786 kb on + strand, within HP15_285at 276.857 kb on + strand, within HP15_285at 276.889 kb on + strand, within HP15_285at 276.895 kb on + strand, within HP15_285at 276.964 kb on - strand, within HP15_285at 277.135 kb on - strand, within HP15_285at 277.138 kb on + strand, within HP15_285at 277.138 kb on + strand, within HP15_285at 277.138 kb on + strand, within HP15_285at 277.146 kb on - strand, within HP15_285at 277.146 kb on - strand, within HP15_285at 277.158 kb on - strand, within HP15_285at 277.231 kb on - strandat 277.256 kb on + strandat 277.339 kb on + strandat 277.360 kb on + strandat 277.598 kb on - strandat 277.641 kb on + strandat 277.641 kb on + strandat 277.721 kb on + strand, within HP15_286at 277.721 kb on + strand, within HP15_286at 277.729 kb on - strand, within HP15_286at 277.729 kb on - strand, within HP15_286at 277.729 kb on - strand, within HP15_286at 277.729 kb on - strand, within HP15_286at 277.729 kb on - strand, within HP15_286at 277.749 kb on + strand, within HP15_286at 277.749 kb on - strand, within HP15_286at 277.884 kb on - strand, within HP15_286at 277.890 kb on + strand, within HP15_286at 277.895 kb on + strand, within HP15_286at 277.896 kb on - strand, within HP15_286at 277.905 kb on + strand, within HP15_286at 277.971 kb on + strand, within HP15_286at 277.972 kb on - strand, within HP15_286at 277.977 kb on + strand, within HP15_286at 278.035 kb on - strand, within HP15_286at 278.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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274,425 - HP15_284 0.25 -3.6
274,573 - HP15_284 0.38 -1.4
274,612 + HP15_284 0.41 -1.5
274,612 + HP15_284 0.41 -4.5
274,620 - HP15_284 0.42 -2.0
274,786 - HP15_284 0.57 -4.0
274,983 - HP15_284 0.74 -1.3
275,026 + HP15_284 0.77 -3.8
275,074 - HP15_284 0.82 -2.2
275,365 - -0.5
275,365 - -1.2
275,365 - -2.5
275,418 - -1.3
275,624 + HP15_285 0.11 +0.3
275,632 - HP15_285 0.11 -0.7
275,699 - HP15_285 0.15 +0.0
275,699 - HP15_285 0.15 -0.9
275,851 + HP15_285 0.22 -0.3
275,860 - HP15_285 0.23 -0.7
275,993 + HP15_285 0.30 -0.5
276,088 + HP15_285 0.34 -0.3
276,132 - HP15_285 0.37 -1.1
276,147 + HP15_285 0.37 +0.1
276,180 + HP15_285 0.39 +2.2
276,195 + HP15_285 0.40 -0.0
276,198 - HP15_285 0.40 +2.0
276,198 - HP15_285 0.40 +2.1
276,203 - HP15_285 0.40 -0.5
276,226 - HP15_285 0.41 -1.6
276,246 + HP15_285 0.42 +2.5
276,292 + HP15_285 0.45 +1.6
276,310 - HP15_285 0.46 +0.4
276,335 - HP15_285 0.47 -0.2
276,435 + HP15_285 0.52 +1.6
276,453 - HP15_285 0.53 -0.4
276,530 + HP15_285 0.57 +0.8
276,531 - HP15_285 0.57 -1.0
276,535 + HP15_285 0.57 +2.6
276,621 - HP15_285 0.62 -1.3
276,666 + HP15_285 0.64 +1.8
276,666 + HP15_285 0.64 +2.4
276,674 - HP15_285 0.64 +2.7
276,679 + HP15_285 0.64 +0.6
276,786 + HP15_285 0.70 -0.3
276,857 + HP15_285 0.74 +3.2
276,889 + HP15_285 0.75 +1.9
276,895 + HP15_285 0.75 +1.8
276,964 - HP15_285 0.79 -1.3
277,135 - HP15_285 0.88 +0.6
277,138 + HP15_285 0.88 +0.0
277,138 + HP15_285 0.88 -0.0
277,138 + HP15_285 0.88 -0.7
277,146 - HP15_285 0.88 +2.1
277,146 - HP15_285 0.88 -2.5
277,158 - HP15_285 0.89 -0.3
277,231 - +1.8
277,256 + +2.3
277,339 + -0.8
277,360 + +0.5
277,598 - -0.2
277,641 + -0.9
277,641 + -2.6
277,721 + HP15_286 0.17 -1.3
277,721 + HP15_286 0.17 +0.7
277,729 - HP15_286 0.19 -1.4
277,729 - HP15_286 0.19 -0.6
277,729 - HP15_286 0.19 +2.2
277,729 - HP15_286 0.19 +2.2
277,729 - HP15_286 0.19 +2.0
277,749 + HP15_286 0.22 -0.4
277,749 - HP15_286 0.22 +1.1
277,884 - HP15_286 0.45 +2.2
277,890 + HP15_286 0.46 -3.0
277,895 + HP15_286 0.47 +0.1
277,896 - HP15_286 0.47 +2.1
277,905 + HP15_286 0.49 +0.7
277,971 + HP15_286 0.60 +0.7
277,972 - HP15_286 0.60 -1.4
277,977 + HP15_286 0.61 -1.5
278,035 - HP15_286 0.71 +3.1
278,153 + +0.0

Or see this region's nucleotide sequence