Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2783 and HP15_2784 are separated by 108 nucleotides HP15_2784 and HP15_2785 are separated by 25 nucleotides HP15_2785 and HP15_2786 are separated by 53 nucleotides HP15_2786 and HP15_2787 are separated by 84 nucleotides
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215
_2784
HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139
_2785
HP15_2786: HP15_2786 - conserved hypothetical protein, secreted, at 2,936,193 to 2,936,882
_2786
HP15_2787: HP15_2787 - ABC-type amino acid transport/signal transduction system, at 2,936,967 to 2,937,611
_2787
Position (kb)
2934
2935
2936
2937 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2933.249 kb on + strand at 2933.560 kb on + strand, within HP15_2784 at 2933.659 kb on - strand, within HP15_2784 at 2933.712 kb on + strand, within HP15_2784 at 2933.754 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.975 kb on + strand, within HP15_2784 at 2934.032 kb on - strand, within HP15_2784 at 2934.053 kb on + strand, within HP15_2784 at 2934.414 kb on - strand at 2934.416 kb on + strand at 2934.498 kb on + strand, within HP15_2785 at 2934.506 kb on - strand, within HP15_2785 at 2934.516 kb on + strand, within HP15_2785 at 2934.538 kb on + strand, within HP15_2785 at 2934.670 kb on - strand, within HP15_2785 at 2934.760 kb on - strand, within HP15_2785 at 2934.775 kb on - strand, within HP15_2785 at 2934.788 kb on - strand, within HP15_2785 at 2934.861 kb on - strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.901 kb on - strand, within HP15_2785 at 2935.035 kb on + strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.100 kb on - strand, within HP15_2785 at 2935.196 kb on + strand, within HP15_2785 at 2935.234 kb on + strand, within HP15_2785 at 2935.250 kb on + strand, within HP15_2785 at 2935.529 kb on + strand, within HP15_2785 at 2935.545 kb on - strand, within HP15_2785 at 2935.584 kb on - strand, within HP15_2785 at 2935.586 kb on + strand, within HP15_2785 at 2935.586 kb on + strand, within HP15_2785 at 2935.621 kb on - strand, within HP15_2785 at 2935.674 kb on + strand, within HP15_2785 at 2935.787 kb on + strand, within HP15_2785 at 2935.846 kb on - strand, within HP15_2785 at 2935.846 kb on - strand, within HP15_2785 at 2935.899 kb on + strand, within HP15_2785 at 2935.907 kb on - strand, within HP15_2785 at 2935.929 kb on + strand, within HP15_2785 at 2935.929 kb on + strand, within HP15_2785 at 2935.937 kb on - strand, within HP15_2785 at 2935.952 kb on - strand at 2935.971 kb on + strand at 2936.015 kb on + strand at 2936.199 kb on - strand at 2936.258 kb on + strand at 2936.266 kb on - strand, within HP15_2786 at 2936.276 kb on - strand, within HP15_2786 at 2936.278 kb on + strand, within HP15_2786 at 2936.288 kb on + strand, within HP15_2786 at 2936.339 kb on + strand, within HP15_2786 at 2936.384 kb on - strand, within HP15_2786 at 2936.420 kb on + strand, within HP15_2786 at 2936.464 kb on + strand, within HP15_2786 at 2936.472 kb on - strand, within HP15_2786 at 2936.479 kb on + strand, within HP15_2786 at 2936.618 kb on + strand, within HP15_2786 at 2936.625 kb on + strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.633 kb on - strand, within HP15_2786 at 2936.684 kb on + strand, within HP15_2786 at 2936.698 kb on + strand, within HP15_2786 at 2936.783 kb on - strand, within HP15_2786 at 2936.784 kb on + strand, within HP15_2786 at 2936.792 kb on - strand, within HP15_2786 at 2936.892 kb on - strand at 2936.958 kb on + strand at 2937.133 kb on - strand, within HP15_2787
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,933,249 + -0.4 2,933,560 + HP15_2784 0.12 -0.3 2,933,659 - HP15_2784 0.25 -0.0 2,933,712 + HP15_2784 0.32 +2.0 2,933,754 + HP15_2784 0.38 +1.1 2,933,814 + HP15_2784 0.46 -2.0 2,933,814 + HP15_2784 0.46 -0.4 2,933,822 - HP15_2784 0.47 -0.2 2,933,822 - HP15_2784 0.47 +0.6 2,933,822 - HP15_2784 0.47 +1.3 2,933,975 + HP15_2784 0.68 +1.3 2,934,032 - HP15_2784 0.75 -1.2 2,934,053 + HP15_2784 0.78 +0.1 2,934,414 - +0.2 2,934,416 + -1.2 2,934,498 + HP15_2785 0.14 +0.7 2,934,506 - HP15_2785 0.14 -0.4 2,934,516 + HP15_2785 0.14 -0.2 2,934,538 + HP15_2785 0.16 +0.3 2,934,670 - HP15_2785 0.23 -0.1 2,934,760 - HP15_2785 0.27 +0.9 2,934,775 - HP15_2785 0.28 -0.2 2,934,788 - HP15_2785 0.29 -1.0 2,934,861 - HP15_2785 0.33 +0.4 2,934,893 + HP15_2785 0.34 -0.2 2,934,893 + HP15_2785 0.34 -0.3 2,934,893 + HP15_2785 0.34 -0.7 2,934,893 + HP15_2785 0.34 -0.2 2,934,901 - HP15_2785 0.35 -0.3 2,935,035 + HP15_2785 0.42 -0.1 2,935,095 - HP15_2785 0.45 +1.4 2,935,095 - HP15_2785 0.45 -1.2 2,935,095 - HP15_2785 0.45 -0.3 2,935,100 - HP15_2785 0.45 -0.2 2,935,196 + HP15_2785 0.50 +1.7 2,935,234 + HP15_2785 0.52 +2.1 2,935,250 + HP15_2785 0.53 -0.8 2,935,529 + HP15_2785 0.68 +1.8 2,935,545 - HP15_2785 0.69 +2.1 2,935,584 - HP15_2785 0.71 +0.8 2,935,586 + HP15_2785 0.71 -1.0 2,935,586 + HP15_2785 0.71 +0.2 2,935,621 - HP15_2785 0.73 -0.8 2,935,674 + HP15_2785 0.75 +1.7 2,935,787 + HP15_2785 0.81 +1.7 2,935,846 - HP15_2785 0.85 +1.7 2,935,846 - HP15_2785 0.85 -0.8 2,935,899 + HP15_2785 0.87 -1.9 2,935,907 - HP15_2785 0.88 -1.3 2,935,929 + HP15_2785 0.89 +1.7 2,935,929 + HP15_2785 0.89 -1.9 2,935,937 - HP15_2785 0.89 -1.7 2,935,952 - +0.1 2,935,971 + -1.7 2,936,015 + +1.7 2,936,199 - +0.0 2,936,258 + +1.4 2,936,266 - HP15_2786 0.11 -0.0 2,936,276 - HP15_2786 0.12 +0.9 2,936,278 + HP15_2786 0.12 +2.7 2,936,288 + HP15_2786 0.14 +2.5 2,936,339 + HP15_2786 0.21 -0.4 2,936,384 - HP15_2786 0.28 -0.4 2,936,420 + HP15_2786 0.33 +3.5 2,936,464 + HP15_2786 0.39 +1.4 2,936,472 - HP15_2786 0.40 +1.7 2,936,479 + HP15_2786 0.41 +0.9 2,936,618 + HP15_2786 0.62 +0.1 2,936,625 + HP15_2786 0.63 +0.8 2,936,626 - HP15_2786 0.63 +1.1 2,936,626 - HP15_2786 0.63 +1.9 2,936,633 - HP15_2786 0.64 +0.2 2,936,684 + HP15_2786 0.71 +3.9 2,936,698 + HP15_2786 0.73 -0.2 2,936,783 - HP15_2786 0.86 +2.3 2,936,784 + HP15_2786 0.86 +2.0 2,936,792 - HP15_2786 0.87 +2.5 2,936,892 - +0.9 2,936,958 + -0.5 2,937,133 - HP15_2787 0.26 -0.1
Or see this region's nucleotide sequence