Strain Fitness in Marinobacter adhaerens HP15 around HP15_2774

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2772 and HP15_2773 are separated by 14 nucleotidesHP15_2773 and HP15_2774 are separated by 20 nucleotidesHP15_2774 and HP15_2775 are separated by 57 nucleotides HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310 _2772 HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780 _2773 HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448 _2774 HP15_2775: HP15_2775 - transcriptional regulator protein, LysR family, at 2,927,506 to 2,928,399 _2775 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -2 -1 0 1 2at 2926.035 kb on + strand, within HP15_2772at 2926.074 kb on - strand, within HP15_2772at 2926.146 kb on - strand, within HP15_2772at 2926.146 kb on - strand, within HP15_2772at 2926.241 kb on - strandat 2926.285 kb on - strandat 2926.305 kb on - strandat 2926.316 kb on + strandat 2926.474 kb on - strand, within HP15_2773at 2926.493 kb on + strand, within HP15_2773at 2926.499 kb on + strand, within HP15_2773at 2926.621 kb on + strand, within HP15_2773at 2926.724 kb on + strand, within HP15_2773at 2926.802 kb on + strandat 2926.872 kb on + strand, within HP15_2774at 2926.913 kb on - strand, within HP15_2774at 2926.988 kb on - strand, within HP15_2774at 2927.015 kb on + strand, within HP15_2774at 2927.028 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.109 kb on + strand, within HP15_2774at 2927.241 kb on - strand, within HP15_2774at 2927.281 kb on + strand, within HP15_2774at 2927.301 kb on + strand, within HP15_2774at 2927.313 kb on + strand, within HP15_2774at 2927.363 kb on + strand, within HP15_2774at 2927.488 kb on + strandat 2927.546 kb on - strandat 2927.556 kb on - strandat 2927.654 kb on - strand, within HP15_2775at 2927.735 kb on - strand, within HP15_2775at 2927.735 kb on - strand, within HP15_2775at 2927.786 kb on + strand, within HP15_2775at 2927.804 kb on - strand, within HP15_2775at 2927.833 kb on - strand, within HP15_2775at 2927.938 kb on + strand, within HP15_2775at 2927.960 kb on + strand, within HP15_2775at 2927.984 kb on - strand, within HP15_2775at 2928.001 kb on - strand, within HP15_2775at 2928.105 kb on + strand, within HP15_2775at 2928.208 kb on + strand, within HP15_2775at 2928.222 kb on - strand, within HP15_2775at 2928.231 kb on - strand, within HP15_2775at 2928.234 kb on - strand, within HP15_2775at 2928.270 kb on + strand, within HP15_2775at 2928.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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2,926,035 + HP15_2772 0.78 -1.5
2,926,074 - HP15_2772 0.81 +0.4
2,926,146 - HP15_2772 0.87 -0.9
2,926,146 - HP15_2772 0.87 -1.2
2,926,241 - +2.0
2,926,285 - -0.5
2,926,305 - -0.1
2,926,316 + -0.8
2,926,474 - HP15_2773 0.33 -0.4
2,926,493 + HP15_2773 0.37 -0.5
2,926,499 + HP15_2773 0.38 +1.9
2,926,621 + HP15_2773 0.65 -2.3
2,926,724 + HP15_2773 0.88 -0.8
2,926,802 + +2.0
2,926,872 + HP15_2774 0.11 -0.2
2,926,913 - HP15_2774 0.17 -1.1
2,926,988 - HP15_2774 0.29 -0.2
2,927,015 + HP15_2774 0.33 -0.2
2,927,028 - HP15_2774 0.35 +0.9
2,927,107 - HP15_2774 0.47 +0.6
2,927,107 - HP15_2774 0.47 -0.0
2,927,109 + HP15_2774 0.48 +0.6
2,927,241 - HP15_2774 0.68 +2.5
2,927,281 + HP15_2774 0.74 +0.5
2,927,301 + HP15_2774 0.77 -1.0
2,927,313 + HP15_2774 0.79 -0.4
2,927,363 + HP15_2774 0.87 -0.4
2,927,488 + -0.5
2,927,546 - +1.0
2,927,556 - +0.2
2,927,654 - HP15_2775 0.17 -0.8
2,927,735 - HP15_2775 0.26 -0.4
2,927,735 - HP15_2775 0.26 -0.4
2,927,786 + HP15_2775 0.31 -0.8
2,927,804 - HP15_2775 0.33 +0.2
2,927,833 - HP15_2775 0.37 +0.3
2,927,938 + HP15_2775 0.48 +2.0
2,927,960 + HP15_2775 0.51 +0.2
2,927,984 - HP15_2775 0.53 +2.6
2,928,001 - HP15_2775 0.55 -0.8
2,928,105 + HP15_2775 0.67 -0.7
2,928,208 + HP15_2775 0.79 +1.6
2,928,222 - HP15_2775 0.80 -0.5
2,928,231 - HP15_2775 0.81 +0.2
2,928,234 - HP15_2775 0.81 +1.0
2,928,270 + HP15_2775 0.85 -0.4
2,928,437 - +0.4

Or see this region's nucleotide sequence