Strain Fitness in Marinobacter adhaerens HP15 around HP15_28

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
31,535	-		HP15_27	0.47	-0.4
31,819	+		HP15_27	0.69	+1.8
31,820	-		HP15_27	0.69	+1.7
31,827	-		HP15_27	0.70	-0.3
31,827	-		HP15_27	0.70	-0.4
31,871	-		HP15_27	0.73	-1.1
31,881	-		HP15_27	0.74	+0.0
31,998	+		HP15_27	0.83	+0.9
31,999	+		HP15_27	0.83	+2.4
32,007	-		HP15_27	0.84	+0.0
32,046	-		HP15_27	0.87	-0.2
32,123	+				-0.1
32,131	-				-1.5
32,201	-				-0.2
32,205	-				-1.1
32,246	+				+2.0
32,247	-				+0.1
32,316	-				-1.0
32,332	+				+0.2
32,446	+				+0.7
32,457	+				+2.1
32,460	-				-1.7
32,460	-				+2.4
32,484	-				+0.9
32,484	-				+2.4
32,523	+				-0.6
32,531	-				+1.2
32,620	+				-0.4
32,635	-				+0.2
32,669	+		HP15_28	0.12	-1.6
32,669	+		HP15_28	0.12	+1.2
32,696	+		HP15_28	0.15	-0.2
32,711	+		HP15_28	0.16	+2.1
32,719	-		HP15_28	0.16	+1.8
32,768	+		HP15_28	0.20	-0.0
32,768	+		HP15_28	0.20	-0.0
32,844	+		HP15_28	0.26	+2.0
32,872	+		HP15_28	0.28	-0.3
32,880	-		HP15_28	0.29	+1.3
32,887	-		HP15_28	0.30	+1.6
32,891	+		HP15_28	0.30	+1.1
32,974	-		HP15_28	0.36	+1.9
32,986	+		HP15_28	0.37	+3.7
32,998	+		HP15_28	0.38	-1.0
32,998	+		HP15_28	0.38	+2.1
33,014	+		HP15_28	0.40	-0.2
33,022	-		HP15_28	0.40	-0.5
33,032	-		HP15_28	0.41	-0.6
33,098	+		HP15_28	0.46	-2.6
33,106	-		HP15_28	0.47	-0.6
33,114	-		HP15_28	0.47	+1.9
33,173	-		HP15_28	0.52	+1.8
33,181	+		HP15_28	0.53	+1.0
33,239	+		HP15_28	0.57	+2.0
33,315	+		HP15_28	0.63	-0.5
33,315	+		HP15_28	0.63	+1.6
33,448	+		HP15_28	0.74	-0.6
33,456	+		HP15_28	0.74	+0.4
33,489	-		HP15_28	0.77	+0.7
33,491	+		HP15_28	0.77	+2.0
33,499	-		HP15_28	0.78	-0.2
33,499	-		HP15_28	0.78	+1.6
33,557	-		HP15_28	0.82	+1.7
33,573	-		HP15_28	0.83	+0.8
33,611	+		HP15_28	0.86	-0.3
33,619	-		HP15_28	0.87	-0.6
33,670	+				-0.2
33,670	+				+1.7
33,670	+				-0.1
33,686	+				-0.3
33,686	+				-0.8
33,712	-				-0.5
33,774	+				-1.0
33,780	+				-1.3
33,788	-				-0.7
33,788	-				+0.6
33,818	+				+1.7
33,821	-				-0.2
33,826	-				-1.1
33,835	-				+1.2
33,934	+				+1.3
33,935	+				-0.3
33,942	-				-1.3
33,967	+				-0.6
33,972	+				-0.7
33,983	+				+1.8
33,991	-				-0.3
34,037	-				+1.8
34,037	-				-0.5
34,105	+				+1.6
34,116	+				-0.0
34,116	+				+1.9
34,124	-				+1.0
34,124	-				-0.4
34,150	+				+0.9
34,150	+				+1.2
34,187	+				-0.3
34,187	+				-0.4
34,227	-		HP15_29	0.12	-1.2
34,262	-		HP15_29	0.15	+1.3
34,384	-		HP15_29	0.22	+1.7
34,408	-		HP15_29	0.24	+1.2
34,417	+		HP15_29	0.24	+1.8
34,421	+		HP15_29	0.25	-0.4
34,421	+		HP15_29	0.25	+2.5
34,436	+		HP15_29	0.26	-1.3
34,436	+		HP15_29	0.26	+1.5
34,444	-		HP15_29	0.26	-0.2
34,457	+		HP15_29	0.27	-1.0
34,465	-		HP15_29	0.28	-0.2
34,465	-		HP15_29	0.28	-0.2
34,487	+		HP15_29	0.29	-2.1
34,521	-		HP15_29	0.31	-0.2
34,521	-		HP15_29	0.31	+0.6
34,553	-		HP15_29	0.33	+2.2
34,640	-		HP15_29	0.39	-0.5
34,653	+		HP15_29	0.40	+0.1
34,653	+		HP15_29	0.40	-0.7
34,661	-		HP15_29	0.40	-0.0
34,716	-		HP15_29	0.44	+1.1
34,754	-		HP15_29	0.46	+2.2