Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2693 and HP15_2694 overlap by 4 nucleotides HP15_2694 and HP15_2695 overlap by 4 nucleotides
HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data) , at 2,845,117 to 2,846,637
_2693
HP15_2694: HP15_2694 - phenylacetic acid degradation protein PaaD, at 2,846,634 to 2,847,080
_2694
HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) , at 2,847,077 to 2,848,324
_2695
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2845.693 kb on - strand, within HP15_2693 at 2845.746 kb on - strand, within HP15_2693 at 2845.792 kb on + strand, within HP15_2693 at 2845.863 kb on - strand, within HP15_2693 at 2845.882 kb on + strand, within HP15_2693 at 2845.973 kb on - strand, within HP15_2693 at 2846.001 kb on + strand, within HP15_2693 at 2846.009 kb on - strand, within HP15_2693 at 2846.032 kb on - strand, within HP15_2693 at 2846.057 kb on + strand, within HP15_2693 at 2846.088 kb on + strand, within HP15_2693 at 2846.134 kb on - strand, within HP15_2693 at 2846.425 kb on + strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.483 kb on + strand, within HP15_2693 at 2846.494 kb on + strand at 2846.582 kb on + strand at 2846.678 kb on + strand at 2846.712 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.805 kb on + strand, within HP15_2694 at 2846.814 kb on - strand, within HP15_2694 at 2846.890 kb on + strand, within HP15_2694 at 2846.988 kb on - strand, within HP15_2694 at 2847.010 kb on + strand, within HP15_2694 at 2847.018 kb on - strand, within HP15_2694 at 2847.028 kb on - strand, within HP15_2694 at 2847.034 kb on + strand, within HP15_2694 at 2847.140 kb on - strand at 2847.154 kb on + strand at 2847.221 kb on + strand, within HP15_2695 at 2847.229 kb on - strand, within HP15_2695 at 2847.259 kb on - strand, within HP15_2695 at 2847.269 kb on - strand, within HP15_2695 at 2847.422 kb on + strand, within HP15_2695 at 2847.457 kb on - strand, within HP15_2695 at 2847.642 kb on + strand, within HP15_2695 at 2847.662 kb on - strand, within HP15_2695 at 2847.900 kb on + strand, within HP15_2695 at 2847.908 kb on - strand, within HP15_2695 at 2847.978 kb on - strand, within HP15_2695 at 2848.073 kb on + strand, within HP15_2695 at 2848.078 kb on + strand, within HP15_2695
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,845,693 - HP15_2693 0.38 -0.4 2,845,746 - HP15_2693 0.41 +1.4 2,845,792 + HP15_2693 0.44 -0.3 2,845,863 - HP15_2693 0.49 -0.3 2,845,882 + HP15_2693 0.50 +1.1 2,845,973 - HP15_2693 0.56 +2.1 2,846,001 + HP15_2693 0.58 +1.8 2,846,009 - HP15_2693 0.59 -0.7 2,846,032 - HP15_2693 0.60 +2.9 2,846,057 + HP15_2693 0.62 +0.2 2,846,088 + HP15_2693 0.64 -0.9 2,846,134 - HP15_2693 0.67 +0.5 2,846,425 + HP15_2693 0.86 -2.1 2,846,481 - HP15_2693 0.90 +0.1 2,846,481 - HP15_2693 0.90 +1.8 2,846,483 + HP15_2693 0.90 +0.3 2,846,494 + +0.5 2,846,582 + +1.8 2,846,678 + +1.2 2,846,712 + HP15_2694 0.17 +0.0 2,846,741 + HP15_2694 0.24 -0.7 2,846,741 + HP15_2694 0.24 -0.6 2,846,805 + HP15_2694 0.38 +0.1 2,846,814 - HP15_2694 0.40 -0.9 2,846,890 + HP15_2694 0.57 -1.3 2,846,988 - HP15_2694 0.79 -0.7 2,847,010 + HP15_2694 0.84 -0.4 2,847,018 - HP15_2694 0.86 -0.3 2,847,028 - HP15_2694 0.88 +0.4 2,847,034 + HP15_2694 0.89 -0.1 2,847,140 - +0.6 2,847,154 + +1.5 2,847,221 + HP15_2695 0.12 +2.3 2,847,229 - HP15_2695 0.12 +0.2 2,847,259 - HP15_2695 0.15 +2.7 2,847,269 - HP15_2695 0.15 -1.3 2,847,422 + HP15_2695 0.28 -0.4 2,847,457 - HP15_2695 0.30 -0.1 2,847,642 + HP15_2695 0.45 -0.2 2,847,662 - HP15_2695 0.47 -0.7 2,847,900 + HP15_2695 0.66 +2.1 2,847,908 - HP15_2695 0.67 +2.0 2,847,978 - HP15_2695 0.72 -1.0 2,848,073 + HP15_2695 0.80 -1.5 2,848,078 + HP15_2695 0.80 +0.2
Or see this region's nucleotide sequence