Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2657 and HP15_2658 are separated by 5 nucleotides HP15_2658 and HP15_2659 are separated by 161 nucleotides HP15_2659 and HP15_2660 overlap by 1 nucleotides HP15_2660 and HP15_2661 overlap by 4 nucleotides
HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905
_2657
HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582
_2658
HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data) , at 2,808,744 to 2,810,270
_2659
HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data) , at 2,810,270 to 2,810,716
_2660
HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data) , at 2,810,713 to 2,811,699
_2661
Position (kb)
2808
2809
2810
2811 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2808.016 kb on - strand, within HP15_2658 at 2808.102 kb on + strand, within HP15_2658 at 2808.108 kb on - strand, within HP15_2658 at 2808.139 kb on - strand, within HP15_2658 at 2808.144 kb on - strand, within HP15_2658 at 2808.170 kb on - strand, within HP15_2658 at 2808.319 kb on - strand, within HP15_2658 at 2808.425 kb on - strand, within HP15_2658 at 2808.537 kb on - strand at 2808.607 kb on + strand at 2808.655 kb on + strand at 2808.663 kb on - strand at 2808.868 kb on + strand at 2809.036 kb on - strand, within HP15_2659 at 2809.078 kb on - strand, within HP15_2659 at 2809.108 kb on + strand, within HP15_2659 at 2809.357 kb on + strand, within HP15_2659 at 2809.676 kb on + strand, within HP15_2659 at 2809.843 kb on - strand, within HP15_2659 at 2809.847 kb on + strand, within HP15_2659 at 2810.390 kb on - strand, within HP15_2660 at 2810.416 kb on + strand, within HP15_2660 at 2810.647 kb on - strand, within HP15_2660 at 2810.852 kb on - strand, within HP15_2661 at 2811.042 kb on + strand, within HP15_2661 at 2811.253 kb on + strand, within HP15_2661
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,808,016 - HP15_2658 0.16 +0.7 2,808,102 + HP15_2658 0.28 -1.1 2,808,108 - HP15_2658 0.29 -1.1 2,808,139 - HP15_2658 0.34 +1.3 2,808,144 - HP15_2658 0.35 -0.4 2,808,170 - HP15_2658 0.39 +0.3 2,808,319 - HP15_2658 0.61 +2.8 2,808,425 - HP15_2658 0.76 +2.6 2,808,537 - +2.1 2,808,607 + -1.0 2,808,655 + -0.2 2,808,663 - +2.9 2,808,868 + +1.3 2,809,036 - HP15_2659 0.19 -0.2 2,809,078 - HP15_2659 0.22 -0.4 2,809,108 + HP15_2659 0.24 +0.3 2,809,357 + HP15_2659 0.40 +2.3 2,809,676 + HP15_2659 0.61 +1.9 2,809,843 - HP15_2659 0.72 +1.9 2,809,847 + HP15_2659 0.72 +2.2 2,810,390 - HP15_2660 0.27 -0.6 2,810,416 + HP15_2660 0.33 +0.5 2,810,647 - HP15_2660 0.84 +0.2 2,810,852 - HP15_2661 0.14 +0.3 2,811,042 + HP15_2661 0.33 -0.0 2,811,253 + HP15_2661 0.55 +1.7
Or see this region's nucleotide sequence