Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2629 and HP15_2630 are separated by 232 nucleotides HP15_2630 and HP15_2631 overlap by 4 nucleotides HP15_2631 and HP15_2632 are separated by 97 nucleotides
HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150
_2629
HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090
_2630
HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268
_2631
HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445
_2632
Position (kb)
2782
2783
2784 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2781.124 kb on - strand at 2781.276 kb on - strand at 2781.278 kb on + strand at 2781.278 kb on + strand at 2781.298 kb on - strand at 2781.299 kb on + strand at 2781.408 kb on + strand at 2781.502 kb on + strand, within HP15_2630 at 2781.732 kb on + strand, within HP15_2630 at 2781.756 kb on + strand, within HP15_2630 at 2781.813 kb on + strand, within HP15_2630 at 2781.813 kb on + strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.850 kb on - strand, within HP15_2630 at 2781.883 kb on - strand, within HP15_2630 at 2781.941 kb on + strand, within HP15_2630 at 2782.232 kb on + strand, within HP15_2631 at 2782.246 kb on + strand, within HP15_2631 at 2782.282 kb on - strand, within HP15_2631 at 2782.367 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.515 kb on - strand, within HP15_2631 at 2782.563 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.586 kb on - strand, within HP15_2631 at 2782.613 kb on - strand, within HP15_2631 at 2782.895 kb on - strand, within HP15_2631 at 2782.903 kb on + strand, within HP15_2631 at 2782.970 kb on + strand, within HP15_2631 at 2782.999 kb on - strand, within HP15_2631 at 2783.215 kb on + strand at 2783.293 kb on - strand at 2783.371 kb on - strand at 2783.409 kb on - strand at 2783.414 kb on - strand at 2783.414 kb on - strand at 2783.420 kb on + strand at 2783.454 kb on - strand at 2783.579 kb on + strand, within HP15_2632 at 2783.586 kb on + strand, within HP15_2632 at 2783.587 kb on - strand, within HP15_2632 at 2783.928 kb on - strand, within HP15_2632 at 2783.998 kb on + strand, within HP15_2632 at 2784.111 kb on + strand, within HP15_2632 at 2784.225 kb on - strand, within HP15_2632 at 2784.236 kb on - strand, within HP15_2632
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,781,124 - +0.2 2,781,276 - -2.1 2,781,278 + +2.2 2,781,278 + +1.7 2,781,298 - +1.9 2,781,299 + -0.8 2,781,408 + +0.3 2,781,502 + HP15_2630 0.17 +0.0 2,781,732 + HP15_2630 0.49 +2.1 2,781,756 + HP15_2630 0.53 -0.0 2,781,813 + HP15_2630 0.61 -0.3 2,781,813 + HP15_2630 0.61 +0.8 2,781,821 - HP15_2630 0.62 +2.3 2,781,821 - HP15_2630 0.62 -0.5 2,781,821 - HP15_2630 0.62 +0.2 2,781,850 - HP15_2630 0.66 -0.5 2,781,883 - HP15_2630 0.71 -1.3 2,781,941 + HP15_2630 0.79 -2.1 2,782,232 + HP15_2631 0.12 -3.0 2,782,246 + HP15_2631 0.13 +0.3 2,782,282 - HP15_2631 0.16 -0.5 2,782,367 + HP15_2631 0.24 +0.3 2,782,499 + HP15_2631 0.35 -0.1 2,782,499 + HP15_2631 0.35 -3.3 2,782,515 - HP15_2631 0.36 -0.5 2,782,563 - HP15_2631 0.40 +0.2 2,782,564 - HP15_2631 0.40 +0.7 2,782,564 - HP15_2631 0.40 -1.8 2,782,586 - HP15_2631 0.42 +1.2 2,782,613 - HP15_2631 0.45 -0.9 2,782,895 - HP15_2631 0.68 +1.6 2,782,903 + HP15_2631 0.69 -0.3 2,782,970 + HP15_2631 0.75 -0.2 2,782,999 - HP15_2631 0.77 -0.3 2,783,215 + -0.4 2,783,293 - +2.0 2,783,371 - -0.9 2,783,409 - +1.1 2,783,414 - +2.0 2,783,414 - +0.2 2,783,420 + -1.4 2,783,454 - +0.5 2,783,579 + HP15_2632 0.20 +0.6 2,783,586 + HP15_2632 0.20 -0.2 2,783,587 - HP15_2632 0.20 -1.2 2,783,928 - HP15_2632 0.52 +0.3 2,783,998 + HP15_2632 0.59 -1.3 2,784,111 + HP15_2632 0.69 -0.3 2,784,225 - HP15_2632 0.80 -0.2 2,784,236 - HP15_2632 0.81 -1.2
Or see this region's nucleotide sequence