Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2624 and HP15_2625 are separated by 7 nucleotides HP15_2625 and HP15_2626 are separated by 15 nucleotides HP15_2626 and HP15_2627 are separated by 4 nucleotides HP15_2627 and HP15_2628 are separated by 192 nucleotides
HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687
_2624
HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597
_2625
HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344
_2626
HP15_2627: HP15_2627 - protein containing DUF1415, at 2,778,349 to 2,778,909
_2627
HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688
_2628
Position (kb)
2777
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2776.637 kb on - strand at 2776.664 kb on + strand at 2776.701 kb on - strand at 2776.907 kb on - strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.081 kb on - strand, within HP15_2625 at 2777.139 kb on - strand, within HP15_2625 at 2777.171 kb on + strand, within HP15_2625 at 2777.227 kb on - strand, within HP15_2625 at 2777.241 kb on - strand, within HP15_2625 at 2777.273 kb on + strand, within HP15_2625 at 2777.297 kb on - strand, within HP15_2625 at 2777.359 kb on + strand, within HP15_2625 at 2777.431 kb on + strand, within HP15_2625 at 2777.438 kb on + strand, within HP15_2625 at 2777.439 kb on - strand, within HP15_2625 at 2777.446 kb on - strand, within HP15_2625 at 2777.703 kb on + strand, within HP15_2626 at 2777.703 kb on + strand, within HP15_2626 at 2777.714 kb on - strand, within HP15_2626 at 2778.106 kb on + strand, within HP15_2626 at 2778.111 kb on + strand, within HP15_2626 at 2778.165 kb on - strand, within HP15_2626 at 2778.345 kb on - strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.355 kb on - strand at 2778.355 kb on - strand at 2778.392 kb on - strand at 2778.434 kb on - strand, within HP15_2627 at 2778.634 kb on + strand, within HP15_2627 at 2778.756 kb on - strand, within HP15_2627 at 2778.837 kb on + strand, within HP15_2627 at 2778.911 kb on - strand at 2778.957 kb on + strand at 2778.960 kb on + strand at 2778.970 kb on + strand at 2779.010 kb on - strand at 2779.089 kb on - strand at 2779.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,776,637 - +0.3 2,776,664 + +0.9 2,776,701 - -0.7 2,776,907 - HP15_2625 0.23 -0.3 2,777,073 + HP15_2625 0.42 -0.6 2,777,073 + HP15_2625 0.42 +0.8 2,777,073 + HP15_2625 0.42 -0.5 2,777,081 - HP15_2625 0.43 +1.7 2,777,139 - HP15_2625 0.49 -2.5 2,777,171 + HP15_2625 0.53 -0.6 2,777,227 - HP15_2625 0.59 +1.6 2,777,241 - HP15_2625 0.60 -0.4 2,777,273 + HP15_2625 0.64 +2.2 2,777,297 - HP15_2625 0.67 +1.1 2,777,359 + HP15_2625 0.74 +2.2 2,777,431 + HP15_2625 0.82 -0.1 2,777,438 + HP15_2625 0.82 +1.9 2,777,439 - HP15_2625 0.82 -0.3 2,777,446 - HP15_2625 0.83 -0.7 2,777,703 + HP15_2626 0.12 +0.1 2,777,703 + HP15_2626 0.12 +0.9 2,777,714 - HP15_2626 0.14 -1.1 2,778,106 + HP15_2626 0.67 +1.9 2,778,111 + HP15_2626 0.68 +1.6 2,778,165 - HP15_2626 0.75 +1.3 2,778,345 - -0.5 2,778,347 + +2.7 2,778,347 + +2.2 2,778,347 + -2.2 2,778,355 - -0.0 2,778,355 - -0.3 2,778,392 - -0.4 2,778,434 - HP15_2627 0.15 +0.2 2,778,634 + HP15_2627 0.51 -0.2 2,778,756 - HP15_2627 0.73 +0.0 2,778,837 + HP15_2627 0.87 -0.1 2,778,911 - +0.3 2,778,957 + +2.7 2,778,960 + -0.4 2,778,970 + +1.7 2,779,010 - +1.6 2,779,089 - +0.0 2,779,184 - -2.1
Or see this region's nucleotide sequence