Strain Fitness in Marinobacter adhaerens HP15 around HP15_26

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_25 and HP15_26 are separated by 47 nucleotidesHP15_26 and HP15_27 are separated by 589 nucleotides HP15_25: HP15_25 - methyltransferase, FkbM family protein-like protein, at 28,258 to 29,088 _25 HP15_26: HP15_26 - drug resistance transporter, Bcr/CflA family protein, at 29,136 to 30,332 _26 HP15_27: HP15_27 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 30,922 to 32,220 _27 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.173 kb on - strandat 28.199 kb on + strandat 28.206 kb on + strandat 28.214 kb on - strandat 28.247 kb on - strandat 28.271 kb on + strandat 28.342 kb on - strand, within HP15_25at 28.362 kb on + strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.451 kb on + strand, within HP15_25at 28.480 kb on - strand, within HP15_25at 28.493 kb on - strand, within HP15_25at 28.582 kb on + strand, within HP15_25at 28.598 kb on + strand, within HP15_25at 28.611 kb on - strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.646 kb on - strand, within HP15_25at 28.651 kb on - strand, within HP15_25at 28.656 kb on - strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.695 kb on + strand, within HP15_25at 28.716 kb on - strand, within HP15_25at 28.759 kb on - strand, within HP15_25at 28.774 kb on + strand, within HP15_25at 28.801 kb on + strand, within HP15_25at 28.829 kb on + strand, within HP15_25at 28.837 kb on - strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.876 kb on + strand, within HP15_25at 28.879 kb on - strand, within HP15_25at 28.881 kb on + strand, within HP15_25at 28.889 kb on - strand, within HP15_25at 28.942 kb on - strand, within HP15_25at 29.084 kb on + strandat 29.092 kb on + strandat 29.100 kb on - strandat 29.123 kb on + strandat 29.123 kb on + strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.134 kb on + strandat 29.268 kb on - strand, within HP15_26at 29.284 kb on - strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.306 kb on - strand, within HP15_26at 29.331 kb on + strand, within HP15_26at 29.340 kb on - strand, within HP15_26at 29.405 kb on - strand, within HP15_26at 29.418 kb on + strand, within HP15_26at 29.598 kb on - strand, within HP15_26at 29.616 kb on + strand, within HP15_26at 29.715 kb on + strand, within HP15_26at 29.806 kb on - strand, within HP15_26at 29.822 kb on - strand, within HP15_26at 29.920 kb on - strand, within HP15_26at 29.922 kb on + strand, within HP15_26at 29.941 kb on + strand, within HP15_26at 29.941 kb on + strand, within HP15_26at 29.944 kb on - strand, within HP15_26at 29.949 kb on - strand, within HP15_26at 29.949 kb on - strand, within HP15_26at 29.963 kb on + strand, within HP15_26at 29.970 kb on + strand, within HP15_26at 30.000 kb on + strand, within HP15_26at 30.021 kb on + strand, within HP15_26at 30.128 kb on - strand, within HP15_26at 30.203 kb on + strand, within HP15_26at 30.203 kb on + strand, within HP15_26at 30.268 kb on + strandat 30.276 kb on - strandat 30.341 kb on + strandat 30.359 kb on - strandat 30.412 kb on - strandat 30.470 kb on + strandat 30.488 kb on - strandat 30.496 kb on + strandat 30.504 kb on - strandat 30.513 kb on + strandat 30.513 kb on - strandat 30.564 kb on + strandat 30.590 kb on - strandat 30.604 kb on - strandat 30.665 kb on + strandat 30.671 kb on + strandat 30.740 kb on + strandat 30.741 kb on - strandat 30.746 kb on - strandat 30.847 kb on + strandat 30.850 kb on + strandat 30.858 kb on - strandat 30.858 kb on - strandat 30.914 kb on + strandat 30.914 kb on + strandat 30.922 kb on - strandat 30.922 kb on - strandat 30.968 kb on + strandat 30.998 kb on - strandat 31.048 kb on + strandat 31.050 kb on + strandat 31.056 kb on - strand, within HP15_27at 31.113 kb on + strand, within HP15_27at 31.115 kb on - strand, within HP15_27at 31.128 kb on - strand, within HP15_27at 31.174 kb on + strand, within HP15_27at 31.174 kb on + strand, within HP15_27at 31.174 kb on + strand, within HP15_27at 31.174 kb on + strand, within HP15_27at 31.174 kb on + strand, within HP15_27at 31.182 kb on - strand, within HP15_27at 31.182 kb on - strand, within HP15_27at 31.184 kb on + strand, within HP15_27at 31.184 kb on + strand, within HP15_27at 31.191 kb on + strand, within HP15_27at 31.211 kb on + strand, within HP15_27at 31.211 kb on + strand, within HP15_27at 31.219 kb on - strand, within HP15_27at 31.220 kb on - strand, within HP15_27at 31.244 kb on + strand, within HP15_27at 31.244 kb on + strand, within HP15_27at 31.252 kb on - strand, within HP15_27at 31.252 kb on - strand, within HP15_27at 31.252 kb on - strand, within HP15_27at 31.255 kb on + strand, within HP15_27at 31.255 kb on + strand, within HP15_27at 31.257 kb on - strand, within HP15_27at 31.262 kb on - strand, within HP15_27at 31.274 kb on + strand, within HP15_27at 31.282 kb on - strand, within HP15_27at 31.313 kb on - strand, within HP15_27

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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28,173 - -0.9
28,199 + -0.7
28,206 + +2.4
28,214 - -0.6
28,247 - -1.4
28,271 + +2.5
28,342 - HP15_25 0.10 +2.0
28,362 + HP15_25 0.13 -0.7
28,433 - HP15_25 0.21 -0.4
28,433 - HP15_25 0.21 -1.4
28,451 + HP15_25 0.23 -0.9
28,480 - HP15_25 0.27 -1.2
28,493 - HP15_25 0.28 -1.0
28,582 + HP15_25 0.39 +0.1
28,598 + HP15_25 0.41 -1.5
28,611 - HP15_25 0.42 +1.9
28,624 + HP15_25 0.44 -0.2
28,624 + HP15_25 0.44 +0.3
28,639 - HP15_25 0.46 -1.4
28,639 - HP15_25 0.46 +1.7
28,639 - HP15_25 0.46 -0.8
28,639 - HP15_25 0.46 -0.1
28,646 - HP15_25 0.47 +0.1
28,651 - HP15_25 0.47 +2.2
28,656 - HP15_25 0.48 +1.4
28,679 + HP15_25 0.51 +2.2
28,679 + HP15_25 0.51 -2.5
28,695 + HP15_25 0.53 -0.3
28,716 - HP15_25 0.55 -0.5
28,759 - HP15_25 0.60 +1.4
28,774 + HP15_25 0.62 -1.0
28,801 + HP15_25 0.65 +1.0
28,829 + HP15_25 0.69 -0.4
28,837 - HP15_25 0.70 +1.5
28,866 + HP15_25 0.73 +2.3
28,866 + HP15_25 0.73 -1.4
28,876 + HP15_25 0.74 -0.5
28,879 - HP15_25 0.75 +1.7
28,881 + HP15_25 0.75 -0.8
28,889 - HP15_25 0.76 +1.8
28,942 - HP15_25 0.82 +1.7
29,084 + -0.3
29,092 + -1.8
29,100 - -1.3
29,123 + +1.9
29,123 + -2.1
29,131 - +2.4
29,131 - +1.6
29,131 - -0.3
29,131 - -1.5
29,131 - +2.1
29,131 - -0.3
29,134 + +1.6
29,268 - HP15_26 0.11 -1.0
29,284 - HP15_26 0.12 +1.9
29,298 + HP15_26 0.14 +0.1
29,298 + HP15_26 0.14 -0.5
29,298 + HP15_26 0.14 -0.8
29,306 - HP15_26 0.14 +2.1
29,331 + HP15_26 0.16 -0.6
29,340 - HP15_26 0.17 +1.7
29,405 - HP15_26 0.22 +1.8
29,418 + HP15_26 0.24 +2.1
29,598 - HP15_26 0.39 +0.2
29,616 + HP15_26 0.40 -1.0
29,715 + HP15_26 0.48 +2.1
29,806 - HP15_26 0.56 -0.0
29,822 - HP15_26 0.57 +0.0
29,920 - HP15_26 0.65 -0.6
29,922 + HP15_26 0.66 -0.1
29,941 + HP15_26 0.67 -0.1
29,941 + HP15_26 0.67 -1.4
29,944 - HP15_26 0.68 -1.0
29,949 - HP15_26 0.68 +2.2
29,949 - HP15_26 0.68 +0.5
29,963 + HP15_26 0.69 +1.5
29,970 + HP15_26 0.70 +2.0
30,000 + HP15_26 0.72 -0.5
30,021 + HP15_26 0.74 -2.0
30,128 - HP15_26 0.83 -1.8
30,203 + HP15_26 0.89 -0.0
30,203 + HP15_26 0.89 +1.6
30,268 + -1.3
30,276 - -0.0
30,341 + +1.0
30,359 - -0.0
30,412 - -0.8
30,470 + -0.4
30,488 - -0.1
30,496 + -1.3
30,504 - +1.9
30,513 + -0.9
30,513 - +1.5
30,564 + +1.4
30,590 - -2.8
30,604 - -0.1
30,665 + -0.7
30,671 + -0.9
30,740 + -1.3
30,741 - +1.8
30,746 - -0.7
30,847 + -0.7
30,850 + +1.1
30,858 - +0.1
30,858 - +0.7
30,914 + -0.7
30,914 + -1.2
30,922 - +1.5
30,922 - -1.5
30,968 + +2.0
30,998 - -0.0
31,048 + -0.1
31,050 + -0.1
31,056 - HP15_27 0.10 -0.5
31,113 + HP15_27 0.15 -2.2
31,115 - HP15_27 0.15 -0.9
31,128 - HP15_27 0.16 +0.7
31,174 + HP15_27 0.19 -1.1
31,174 + HP15_27 0.19 +2.3
31,174 + HP15_27 0.19 +1.4
31,174 + HP15_27 0.19 -0.6
31,174 + HP15_27 0.19 -0.6
31,182 - HP15_27 0.20 +0.3
31,182 - HP15_27 0.20 +0.2
31,184 + HP15_27 0.20 +0.1
31,184 + HP15_27 0.20 +2.0
31,191 + HP15_27 0.21 -0.3
31,211 + HP15_27 0.22 +0.5
31,211 + HP15_27 0.22 -1.9
31,219 - HP15_27 0.23 -0.2
31,220 - HP15_27 0.23 -0.3
31,244 + HP15_27 0.25 +0.6
31,244 + HP15_27 0.25 +0.1
31,252 - HP15_27 0.25 -0.3
31,252 - HP15_27 0.25 -1.7
31,252 - HP15_27 0.25 +2.3
31,255 + HP15_27 0.26 +1.4
31,255 + HP15_27 0.26 +1.4
31,257 - HP15_27 0.26 +1.5
31,262 - HP15_27 0.26 -0.5
31,274 + HP15_27 0.27 -0.6
31,282 - HP15_27 0.28 -0.3
31,313 - HP15_27 0.30 -0.0

Or see this region's nucleotide sequence