Strain Fitness in Marinobacter adhaerens HP15 around HP15_2510

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2508 and HP15_2509 are separated by 161 nucleotidesHP15_2509 and HP15_2510 overlap by 26 nucleotidesHP15_2510 and HP15_2511 are separated by 174 nucleotides HP15_2508: HP15_2508 - OmpA/MotB domain protein, at 2,649,096 to 2,649,836 _2508 HP15_2509: HP15_2509 - hypothetical protein, at 2,649,998 to 2,650,111 _2509 HP15_2510: HP15_2510 - flagellar motor protein MotA, at 2,650,086 to 2,650,937 _2510 HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966 _2511 Position (kb) 2650 2651Strain fitness (log2 ratio) -1 0 1 2at 2649.311 kb on - strand, within HP15_2508at 2649.339 kb on - strand, within HP15_2508at 2649.368 kb on + strand, within HP15_2508at 2649.403 kb on + strand, within HP15_2508at 2649.474 kb on - strand, within HP15_2508at 2649.487 kb on - strand, within HP15_2508at 2649.514 kb on + strand, within HP15_2508at 2649.577 kb on + strand, within HP15_2508at 2649.602 kb on - strand, within HP15_2508at 2649.649 kb on + strand, within HP15_2508at 2649.667 kb on + strand, within HP15_2508at 2649.667 kb on + strand, within HP15_2508at 2649.733 kb on - strand, within HP15_2508at 2649.830 kb on + strandat 2650.068 kb on + strand, within HP15_2509at 2650.076 kb on - strand, within HP15_2509at 2650.221 kb on + strand, within HP15_2510at 2650.284 kb on + strand, within HP15_2510at 2650.325 kb on - strand, within HP15_2510at 2650.468 kb on - strand, within HP15_2510at 2650.556 kb on - strand, within HP15_2510at 2650.602 kb on - strand, within HP15_2510at 2650.687 kb on + strand, within HP15_2510at 2650.809 kb on + strand, within HP15_2510at 2650.809 kb on + strand, within HP15_2510at 2650.817 kb on - strand, within HP15_2510at 2650.880 kb on + strandat 2650.905 kb on - strandat 2650.937 kb on - strandat 2651.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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2,649,311 - HP15_2508 0.29 +1.6
2,649,339 - HP15_2508 0.33 +1.4
2,649,368 + HP15_2508 0.37 +0.6
2,649,403 + HP15_2508 0.41 -0.0
2,649,474 - HP15_2508 0.51 +2.0
2,649,487 - HP15_2508 0.53 +1.8
2,649,514 + HP15_2508 0.56 +1.6
2,649,577 + HP15_2508 0.65 +1.7
2,649,602 - HP15_2508 0.68 +1.4
2,649,649 + HP15_2508 0.75 +0.1
2,649,667 + HP15_2508 0.77 +0.6
2,649,667 + HP15_2508 0.77 +2.0
2,649,733 - HP15_2508 0.86 +1.8
2,649,830 + +2.0
2,650,068 + HP15_2509 0.61 +1.5
2,650,076 - HP15_2509 0.68 +1.7
2,650,221 + HP15_2510 0.16 +0.6
2,650,284 + HP15_2510 0.23 -0.5
2,650,325 - HP15_2510 0.28 +2.7
2,650,468 - HP15_2510 0.45 +1.2
2,650,556 - HP15_2510 0.55 +0.7
2,650,602 - HP15_2510 0.61 +0.8
2,650,687 + HP15_2510 0.71 +1.0
2,650,809 + HP15_2510 0.85 +0.2
2,650,809 + HP15_2510 0.85 +2.4
2,650,817 - HP15_2510 0.86 -1.7
2,650,880 + +0.9
2,650,905 - +1.7
2,650,937 - +1.4
2,651,031 - -0.7

Or see this region's nucleotide sequence