Strain Fitness in Marinobacter adhaerens HP15 around HP15_2296

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2294 and HP15_2295 are separated by 170 nucleotidesHP15_2295 and HP15_2296 are separated by 18 nucleotidesHP15_2296 and HP15_2297 overlap by 7 nucleotides HP15_2294: HP15_2294 - chromosome partitioning protein ParA, at 2,415,721 to 2,416,542 _2294 HP15_2295: HP15_2295 - flagellar motor protein MotD, at 2,416,713 to 2,417,495 _2295 HP15_2296: HP15_2296 - chemotaxis protein MotA, at 2,417,514 to 2,418,260 _2296 HP15_2297: HP15_2297 - response regulator receiver modulated CheB methylesterase, at 2,418,254 to 2,419,330 _2297 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -1 0 1 2 3at 2416.520 kb on + strandat 2416.520 kb on + strandat 2416.601 kb on + strandat 2416.601 kb on + strandat 2416.668 kb on - strandat 2416.693 kb on - strandat 2416.820 kb on + strand, within HP15_2295at 2416.878 kb on + strand, within HP15_2295at 2416.997 kb on - strand, within HP15_2295at 2416.997 kb on - strand, within HP15_2295at 2417.280 kb on - strand, within HP15_2295at 2417.300 kb on + strand, within HP15_2295at 2417.318 kb on - strand, within HP15_2295at 2417.320 kb on + strand, within HP15_2295at 2417.394 kb on - strand, within HP15_2295at 2417.693 kb on + strand, within HP15_2296at 2417.731 kb on - strand, within HP15_2296at 2417.733 kb on - strand, within HP15_2296at 2417.743 kb on - strand, within HP15_2296at 2417.832 kb on + strand, within HP15_2296at 2417.916 kb on + strand, within HP15_2296at 2417.963 kb on + strand, within HP15_2296at 2417.979 kb on + strand, within HP15_2296at 2418.111 kb on - strand, within HP15_2296at 2418.252 kb on + strandat 2418.397 kb on + strand, within HP15_2297at 2418.488 kb on + strand, within HP15_2297at 2418.534 kb on - strand, within HP15_2297at 2418.626 kb on - strand, within HP15_2297at 2418.635 kb on + strand, within HP15_2297at 2418.824 kb on - strand, within HP15_2297at 2419.041 kb on - strand, within HP15_2297at 2419.079 kb on - strand, within HP15_2297at 2419.135 kb on + strand, within HP15_2297at 2419.143 kb on - strand, within HP15_2297at 2419.164 kb on - strand, within HP15_2297

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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2,416,520 + -0.4
2,416,520 + +2.0
2,416,601 + -1.1
2,416,601 + -0.7
2,416,668 - -0.9
2,416,693 - -0.5
2,416,820 + HP15_2295 0.14 +1.7
2,416,878 + HP15_2295 0.21 +1.4
2,416,997 - HP15_2295 0.36 +1.5
2,416,997 - HP15_2295 0.36 +1.6
2,417,280 - HP15_2295 0.72 +2.0
2,417,300 + HP15_2295 0.75 +1.6
2,417,318 - HP15_2295 0.77 +2.2
2,417,320 + HP15_2295 0.78 +1.7
2,417,394 - HP15_2295 0.87 +1.1
2,417,693 + HP15_2296 0.24 +0.0
2,417,731 - HP15_2296 0.29 +1.4
2,417,733 - HP15_2296 0.29 +1.2
2,417,743 - HP15_2296 0.31 +1.6
2,417,832 + HP15_2296 0.43 +1.8
2,417,916 + HP15_2296 0.54 +2.8
2,417,963 + HP15_2296 0.60 +1.2
2,417,979 + HP15_2296 0.62 +2.0
2,418,111 - HP15_2296 0.80 +0.6
2,418,252 + +2.0
2,418,397 + HP15_2297 0.13 +2.3
2,418,488 + HP15_2297 0.22 +1.6
2,418,534 - HP15_2297 0.26 +1.9
2,418,626 - HP15_2297 0.35 +1.8
2,418,635 + HP15_2297 0.35 +1.1
2,418,824 - HP15_2297 0.53 +1.9
2,419,041 - HP15_2297 0.73 +2.3
2,419,079 - HP15_2297 0.77 +3.5
2,419,135 + HP15_2297 0.82 +2.9
2,419,143 - HP15_2297 0.83 +2.5
2,419,164 - HP15_2297 0.84 +1.6

Or see this region's nucleotide sequence