Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_232 and HP15_233 are separated by 33 nucleotides HP15_233 and HP15_234 are separated by 184 nucleotides
HP15_232: HP15_232 - molybdenum cofactor synthesis domain protein, at 216,046 to 217,260
_232
HP15_233: HP15_233 - molybdenum cofactor biosynthesis protein B-like protein, at 217,294 to 217,866
_233
HP15_234: HP15_234 - transcription termination factor rho, at 218,051 to 219,493
_234
Position (kb) 217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 216.312 kb on - strand, within HP15_232 at 216.362 kb on - strand, within HP15_232 at 216.428 kb on + strand, within HP15_232 at 216.487 kb on - strand, within HP15_232 at 216.534 kb on - strand, within HP15_232 at 216.539 kb on - strand, within HP15_232 at 216.593 kb on + strand, within HP15_232 at 216.642 kb on + strand, within HP15_232 at 216.650 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.788 kb on - strand, within HP15_232 at 216.886 kb on - strand, within HP15_232 at 216.896 kb on - strand, within HP15_232 at 217.077 kb on + strand, within HP15_232 at 217.085 kb on - strand, within HP15_232 at 217.128 kb on - strand, within HP15_232 at 217.133 kb on - strand, within HP15_232 at 217.168 kb on - strand at 217.178 kb on - strand at 217.227 kb on - strand at 217.238 kb on + strand at 217.292 kb on - strand at 217.342 kb on + strand at 217.385 kb on + strand, within HP15_233 at 217.470 kb on - strand, within HP15_233 at 217.504 kb on + strand, within HP15_233 at 217.509 kb on - strand, within HP15_233 at 217.512 kb on - strand, within HP15_233 at 217.706 kb on - strand, within HP15_233 at 217.730 kb on + strand, within HP15_233 at 217.754 kb on + strand, within HP15_233 at 217.773 kb on + strand, within HP15_233 at 217.778 kb on + strand, within HP15_233 at 217.783 kb on + strand, within HP15_233 at 217.786 kb on - strand, within HP15_233 at 217.788 kb on + strand, within HP15_233 at 217.791 kb on - strand, within HP15_233 at 217.791 kb on - strand, within HP15_233 at 217.828 kb on + strand at 217.847 kb on + strand at 217.847 kb on + strand at 217.861 kb on + strand at 217.869 kb on - strand at 217.869 kb on - strand at 218.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 216,312 - HP15_232 0.22 -1.1 216,362 - HP15_232 0.26 -2.2 216,428 + HP15_232 0.31 +0.9 216,487 - HP15_232 0.36 +0.4 216,534 - HP15_232 0.40 +0.5 216,539 - HP15_232 0.41 +0.0 216,593 + HP15_232 0.45 -0.4 216,642 + HP15_232 0.49 +1.1 216,650 - HP15_232 0.50 -1.0 216,677 - HP15_232 0.52 -1.1 216,677 - HP15_232 0.52 +2.0 216,677 - HP15_232 0.52 -0.6 216,788 - HP15_232 0.61 -0.6 216,886 - HP15_232 0.69 +2.3 216,896 - HP15_232 0.70 -2.1 217,077 + HP15_232 0.85 -1.8 217,085 - HP15_232 0.86 +2.5 217,128 - HP15_232 0.89 -1.5 217,133 - HP15_232 0.89 -0.3 217,168 - -0.1 217,178 - -1.0 217,227 - -0.5 217,238 + -0.6 217,292 - -0.7 217,342 + +0.5 217,385 + HP15_233 0.16 -0.5 217,470 - HP15_233 0.31 +0.6 217,504 + HP15_233 0.37 -2.5 217,509 - HP15_233 0.38 +1.8 217,512 - HP15_233 0.38 -0.8 217,706 - HP15_233 0.72 -0.6 217,730 + HP15_233 0.76 +1.7 217,754 + HP15_233 0.80 +3.1 217,773 + HP15_233 0.84 +2.1 217,778 + HP15_233 0.84 +2.2 217,783 + HP15_233 0.85 -0.5 217,786 - HP15_233 0.86 +1.0 217,788 + HP15_233 0.86 +2.0 217,791 - HP15_233 0.87 +2.5 217,791 - HP15_233 0.87 +1.8 217,828 + +1.3 217,847 + +2.4 217,847 + -0.7 217,861 + -1.5 217,869 - +2.5 217,869 - +0.7 218,130 + -0.5
Or see this region's nucleotide sequence