Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2150 and HP15_2151 are separated by 12 nucleotides HP15_2151 and HP15_2152 are separated by 21 nucleotides
HP15_2150: HP15_2150 - ATPase, at 2,252,720 to 2,255,185
_2150
HP15_2151: HP15_2151 - conserved hypothetical protein, at 2,255,198 to 2,256,757
_2151
HP15_2152: HP15_2152 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 2,256,779 to 2,257,744
_2152
Position (kb)
2255
2256
2257 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2254.238 kb on - strand, within HP15_2150 at 2254.251 kb on + strand, within HP15_2150 at 2254.259 kb on - strand, within HP15_2150 at 2254.276 kb on + strand, within HP15_2150 at 2254.288 kb on + strand, within HP15_2150 at 2254.392 kb on + strand, within HP15_2150 at 2254.392 kb on + strand, within HP15_2150 at 2254.404 kb on + strand, within HP15_2150 at 2254.480 kb on - strand, within HP15_2150 at 2254.485 kb on - strand, within HP15_2150 at 2254.507 kb on - strand, within HP15_2150 at 2254.515 kb on + strand, within HP15_2150 at 2254.515 kb on + strand, within HP15_2150 at 2254.538 kb on + strand, within HP15_2150 at 2254.538 kb on + strand, within HP15_2150 at 2254.576 kb on - strand, within HP15_2150 at 2254.671 kb on - strand, within HP15_2150 at 2254.826 kb on - strand, within HP15_2150 at 2254.831 kb on - strand, within HP15_2150 at 2254.840 kb on - strand, within HP15_2150 at 2254.862 kb on - strand, within HP15_2150 at 2254.862 kb on - strand, within HP15_2150 at 2254.867 kb on - strand, within HP15_2150 at 2254.867 kb on - strand, within HP15_2150 at 2255.103 kb on + strand at 2255.104 kb on + strand at 2255.112 kb on - strand at 2255.175 kb on + strand at 2255.324 kb on + strand at 2255.359 kb on + strand, within HP15_2151 at 2255.367 kb on - strand, within HP15_2151 at 2255.383 kb on + strand, within HP15_2151 at 2255.388 kb on - strand, within HP15_2151 at 2255.426 kb on + strand, within HP15_2151 at 2255.434 kb on - strand, within HP15_2151 at 2255.465 kb on - strand, within HP15_2151 at 2255.596 kb on + strand, within HP15_2151 at 2255.804 kb on - strand, within HP15_2151 at 2255.859 kb on + strand, within HP15_2151 at 2255.978 kb on - strand, within HP15_2151 at 2256.007 kb on + strand, within HP15_2151 at 2256.278 kb on + strand, within HP15_2151 at 2256.322 kb on + strand, within HP15_2151 at 2256.435 kb on + strand, within HP15_2151 at 2256.467 kb on - strand, within HP15_2151 at 2256.549 kb on + strand, within HP15_2151 at 2256.582 kb on - strand, within HP15_2151 at 2256.607 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.781 kb on + strand at 2256.796 kb on + strand at 2256.804 kb on - strand at 2256.804 kb on - strand at 2256.804 kb on - strand at 2256.807 kb on + strand at 2256.841 kb on + strand at 2257.242 kb on + strand, within HP15_2152 at 2257.247 kb on + strand, within HP15_2152 at 2257.265 kb on - strand, within HP15_2152 at 2257.268 kb on - strand, within HP15_2152 at 2257.414 kb on - strand, within HP15_2152 at 2257.418 kb on + strand, within HP15_2152 at 2257.504 kb on + strand, within HP15_2152 at 2257.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,254,238 - HP15_2150 0.62 -0.2 2,254,251 + HP15_2150 0.62 -2.3 2,254,259 - HP15_2150 0.62 +2.4 2,254,276 + HP15_2150 0.63 +0.2 2,254,288 + HP15_2150 0.64 -0.9 2,254,392 + HP15_2150 0.68 -1.0 2,254,392 + HP15_2150 0.68 -0.1 2,254,404 + HP15_2150 0.68 +1.5 2,254,480 - HP15_2150 0.71 +0.0 2,254,485 - HP15_2150 0.72 +0.7 2,254,507 - HP15_2150 0.72 +2.1 2,254,515 + HP15_2150 0.73 +2.3 2,254,515 + HP15_2150 0.73 +0.2 2,254,538 + HP15_2150 0.74 +1.8 2,254,538 + HP15_2150 0.74 +0.4 2,254,576 - HP15_2150 0.75 -0.3 2,254,671 - HP15_2150 0.79 -0.6 2,254,826 - HP15_2150 0.85 +1.4 2,254,831 - HP15_2150 0.86 -0.8 2,254,840 - HP15_2150 0.86 -0.8 2,254,862 - HP15_2150 0.87 +0.0 2,254,862 - HP15_2150 0.87 +2.0 2,254,867 - HP15_2150 0.87 +0.1 2,254,867 - HP15_2150 0.87 +1.6 2,255,103 + -1.7 2,255,104 + -0.1 2,255,112 - +1.7 2,255,175 + +1.1 2,255,324 + +1.8 2,255,359 + HP15_2151 0.10 -0.6 2,255,367 - HP15_2151 0.11 +1.0 2,255,383 + HP15_2151 0.12 -0.7 2,255,388 - HP15_2151 0.12 -0.6 2,255,426 + HP15_2151 0.15 +1.5 2,255,434 - HP15_2151 0.15 -1.1 2,255,465 - HP15_2151 0.17 -0.5 2,255,596 + HP15_2151 0.26 -0.5 2,255,804 - HP15_2151 0.39 -0.6 2,255,859 + HP15_2151 0.42 -0.3 2,255,978 - HP15_2151 0.50 +0.0 2,256,007 + HP15_2151 0.52 -0.1 2,256,278 + HP15_2151 0.69 -1.0 2,256,322 + HP15_2151 0.72 +0.0 2,256,435 + HP15_2151 0.79 -0.6 2,256,467 - HP15_2151 0.81 +1.8 2,256,549 + HP15_2151 0.87 -0.0 2,256,582 - HP15_2151 0.89 +0.7 2,256,607 + -0.9 2,256,701 + +0.8 2,256,701 + +1.8 2,256,701 + -0.9 2,256,701 + -0.9 2,256,709 - -0.4 2,256,709 - -1.3 2,256,709 - +0.3 2,256,709 - +2.2 2,256,781 + +1.9 2,256,796 + -0.9 2,256,804 - -1.0 2,256,804 - -1.6 2,256,804 - -1.4 2,256,807 + -0.6 2,256,841 + +2.1 2,257,242 + HP15_2152 0.48 -1.1 2,257,247 + HP15_2152 0.48 -0.6 2,257,265 - HP15_2152 0.50 -0.1 2,257,268 - HP15_2152 0.51 +1.3 2,257,414 - HP15_2152 0.66 +2.1 2,257,418 + HP15_2152 0.66 +1.8 2,257,504 + HP15_2152 0.75 -0.5 2,257,704 - -0.2
Or see this region's nucleotide sequence