Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1916 and HP15_1917 are separated by 0 nucleotides HP15_1917 and HP15_1918 overlap by 4 nucleotides
HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335
_1916
HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511
_1917
HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569
_1918
Position (kb)
2032
2033
2034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2031.418 kb on + strand, within HP15_1916 at 2031.438 kb on + strand, within HP15_1916 at 2031.600 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.848 kb on + strand, within HP15_1916 at 2031.913 kb on + strand, within HP15_1916 at 2031.913 kb on - strand, within HP15_1916 at 2032.163 kb on + strand, within HP15_1916 at 2032.356 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.397 kb on + strand at 2032.509 kb on + strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.693 kb on - strand, within HP15_1917 at 2033.160 kb on - strand, within HP15_1917 at 2033.210 kb on - strand, within HP15_1917 at 2033.380 kb on + strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.685 kb on - strand, within HP15_1918 at 2033.876 kb on - strand, within HP15_1918 at 2033.877 kb on + strand, within HP15_1918 at 2033.936 kb on + strand, within HP15_1918 at 2033.944 kb on - strand, within HP15_1918 at 2034.036 kb on - strand, within HP15_1918 at 2034.176 kb on - strand, within HP15_1918 at 2034.426 kb on + strand, within HP15_1918 at 2034.434 kb on - strand, within HP15_1918
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,031,418 + HP15_1916 0.33 -0.6 2,031,438 + HP15_1916 0.35 +2.0 2,031,600 - HP15_1916 0.46 -1.3 2,031,607 - HP15_1916 0.47 -0.5 2,031,607 - HP15_1916 0.47 +1.7 2,031,698 - HP15_1916 0.53 -1.2 2,031,698 - HP15_1916 0.53 -1.8 2,031,798 - HP15_1916 0.61 -0.5 2,031,798 - HP15_1916 0.61 -1.3 2,031,848 + HP15_1916 0.64 +0.3 2,031,913 + HP15_1916 0.69 +2.2 2,031,913 - HP15_1916 0.69 -0.7 2,032,163 + HP15_1916 0.87 -0.5 2,032,356 + -0.1 2,032,366 + +1.5 2,032,366 + +0.6 2,032,366 + -0.9 2,032,397 + -1.7 2,032,509 + HP15_1917 0.15 -0.3 2,032,517 - HP15_1917 0.15 -1.9 2,032,517 - HP15_1917 0.15 +1.0 2,032,693 - HP15_1917 0.30 -1.1 2,033,160 - HP15_1917 0.70 +0.6 2,033,210 - HP15_1917 0.74 -1.0 2,033,380 + HP15_1917 0.89 -1.8 2,033,389 - HP15_1917 0.90 +0.5 2,033,389 - HP15_1917 0.90 -1.7 2,033,685 - HP15_1918 0.17 -1.1 2,033,876 - HP15_1918 0.35 +1.6 2,033,877 + HP15_1918 0.35 -1.1 2,033,936 + HP15_1918 0.40 -0.6 2,033,944 - HP15_1918 0.41 +0.1 2,034,036 - HP15_1918 0.50 -0.5 2,034,176 - HP15_1918 0.63 +2.2 2,034,426 + HP15_1918 0.86 +1.9 2,034,434 - HP15_1918 0.87 +0.2
Or see this region's nucleotide sequence