Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1905 and HP15_1906 are separated by 1 nucleotides HP15_1906 and HP15_1907 are separated by 1 nucleotides HP15_1907 and HP15_1908 are separated by 6 nucleotides HP15_1908 and HP15_1909 are separated by 3 nucleotides
HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165
_1905
HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787
_1906
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089
_1908
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
Position (kb)
2017
2018
2019
2020 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2016.916 kb on - strand at 2017.012 kb on - strand at 2017.040 kb on + strand at 2017.064 kb on - strand at 2017.432 kb on + strand, within HP15_1906 at 2017.501 kb on + strand, within HP15_1906 at 2017.553 kb on - strand, within HP15_1906 at 2017.657 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.672 kb on - strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.692 kb on - strand, within HP15_1906 at 2017.750 kb on - strand at 2017.843 kb on + strand at 2017.882 kb on - strand at 2017.913 kb on - strand at 2017.940 kb on - strand, within HP15_1907 at 2018.110 kb on - strand, within HP15_1907 at 2018.130 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907 at 2018.835 kb on + strand, within HP15_1907 at 2019.058 kb on + strand at 2019.142 kb on + strand at 2019.315 kb on + strand, within HP15_1908 at 2019.364 kb on + strand, within HP15_1908 at 2019.372 kb on - strand, within HP15_1908 at 2019.489 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.593 kb on + strand, within HP15_1908 at 2019.685 kb on - strand, within HP15_1908 at 2019.729 kb on - strand, within HP15_1908 at 2019.827 kb on - strand, within HP15_1908 at 2019.864 kb on + strand, within HP15_1908 at 2019.907 kb on - strand, within HP15_1908 at 2019.990 kb on - strand, within HP15_1908 at 2020.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,016,916 - +1.4 2,017,012 - +0.3 2,017,040 + +1.2 2,017,064 - -0.6 2,017,432 + HP15_1906 0.43 -0.7 2,017,501 + HP15_1906 0.54 +2.0 2,017,553 - HP15_1906 0.62 -0.6 2,017,657 - HP15_1906 0.79 +0.8 2,017,662 - HP15_1906 0.80 -1.5 2,017,662 - HP15_1906 0.80 +0.4 2,017,672 - HP15_1906 0.81 +1.9 2,017,674 + HP15_1906 0.82 +2.1 2,017,674 + HP15_1906 0.82 -0.2 2,017,692 - HP15_1906 0.85 +0.4 2,017,750 - -0.2 2,017,843 + -2.2 2,017,882 - -3.5 2,017,913 - -4.2 2,017,940 - HP15_1907 0.11 -3.1 2,018,110 - HP15_1907 0.24 -2.4 2,018,130 + HP15_1907 0.25 -4.4 2,018,191 + HP15_1907 0.29 -3.0 2,018,191 + HP15_1907 0.29 -4.8 2,018,191 + HP15_1907 0.29 -3.9 2,018,196 + HP15_1907 0.30 -1.7 2,018,196 + HP15_1907 0.30 -3.8 2,018,340 + HP15_1907 0.40 -3.4 2,018,835 + HP15_1907 0.77 -3.3 2,019,058 + -3.3 2,019,142 + -3.3 2,019,315 + HP15_1908 0.17 +3.0 2,019,364 + HP15_1908 0.22 +2.4 2,019,372 - HP15_1908 0.23 +0.7 2,019,489 + HP15_1908 0.35 -1.4 2,019,582 + HP15_1908 0.45 +0.7 2,019,582 + HP15_1908 0.45 -0.6 2,019,593 + HP15_1908 0.47 +1.2 2,019,685 - HP15_1908 0.56 -0.5 2,019,729 - HP15_1908 0.61 +0.7 2,019,827 - HP15_1908 0.72 +0.5 2,019,864 + HP15_1908 0.76 +2.2 2,019,907 - HP15_1908 0.80 +0.6 2,019,990 - HP15_1908 0.89 +1.2 2,020,117 - -1.4
Or see this region's nucleotide sequence