Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1899 and HP15_1900 are separated by 11 nucleotides HP15_1900 and HP15_1901 are separated by 32 nucleotides HP15_1901 and HP15_1902 are separated by 57 nucleotides HP15_1902 and HP15_1903 are separated by 56 nucleotides
HP15_1899: HP15_1899 - UDP-Glucose 4-empimerase, at 2,008,918 to 2,009,943
_1899
HP15_1900: HP15_1900 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,009,955 to 2,010,479
_1900
HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798
_1901
HP15_1902: HP15_1902 - glucose-1-phosphate cytidylyltransferase, at 2,011,856 to 2,012,608
_1902
HP15_1903: HP15_1903 - N-acetylglucosaminyl phosphatidylinositol deacetylase, at 2,012,665 to 2,013,273
_1903
Position (kb)
2010
2011
2012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2009.604 kb on - strand, within HP15_1899 at 2009.692 kb on + strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.722 kb on - strand, within HP15_1899 at 2009.783 kb on + strand, within HP15_1899 at 2009.801 kb on + strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.801 kb on - strand, within HP15_1899 at 2009.819 kb on - strand, within HP15_1899 at 2010.302 kb on - strand, within HP15_1900 at 2010.395 kb on - strand, within HP15_1900 at 2010.548 kb on + strand at 2010.601 kb on + strand at 2010.616 kb on + strand at 2010.624 kb on - strand at 2010.668 kb on - strand, within HP15_1901 at 2010.701 kb on + strand, within HP15_1901 at 2010.757 kb on + strand, within HP15_1901 at 2010.907 kb on - strand, within HP15_1901 at 2011.047 kb on - strand, within HP15_1901 at 2011.063 kb on + strand, within HP15_1901 at 2011.209 kb on + strand, within HP15_1901 at 2011.211 kb on - strand, within HP15_1901 at 2011.234 kb on + strand, within HP15_1901 at 2011.451 kb on - strand, within HP15_1901 at 2011.509 kb on + strand, within HP15_1901 at 2011.590 kb on + strand, within HP15_1901 at 2011.670 kb on + strand at 2011.762 kb on + strand at 2011.812 kb on + strand at 2012.002 kb on - strand, within HP15_1902 at 2012.164 kb on - strand, within HP15_1902 at 2012.340 kb on - strand, within HP15_1902 at 2012.357 kb on - strand, within HP15_1902 at 2012.360 kb on - strand, within HP15_1902 at 2012.444 kb on + strand, within HP15_1902 at 2012.555 kb on - strand at 2012.614 kb on + strand at 2012.614 kb on + strand at 2012.622 kb on - strand at 2012.638 kb on + strand at 2012.653 kb on - strand at 2012.702 kb on + strand at 2012.736 kb on - strand, within HP15_1903 at 2012.738 kb on + strand, within HP15_1903 at 2012.751 kb on - strand, within HP15_1903 at 2012.753 kb on + strand, within HP15_1903
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 2,009,604 - HP15_1899 0.67 +1.8 2,009,692 + HP15_1899 0.75 +0.3 2,009,722 - HP15_1899 0.78 -0.0 2,009,722 - HP15_1899 0.78 +2.1 2,009,722 - HP15_1899 0.78 -0.5 2,009,783 + HP15_1899 0.84 +0.5 2,009,801 + HP15_1899 0.86 -0.8 2,009,801 - HP15_1899 0.86 +1.9 2,009,801 - HP15_1899 0.86 +0.1 2,009,819 - HP15_1899 0.88 +1.3 2,010,302 - HP15_1900 0.66 +2.0 2,010,395 - HP15_1900 0.84 +1.6 2,010,548 + -0.4 2,010,601 + -0.8 2,010,616 + -0.7 2,010,624 - -0.8 2,010,668 - HP15_1901 0.12 +1.8 2,010,701 + HP15_1901 0.15 +3.4 2,010,757 + HP15_1901 0.19 -2.8 2,010,907 - HP15_1901 0.31 +2.3 2,011,047 - HP15_1901 0.42 -0.5 2,011,063 + HP15_1901 0.43 +2.2 2,011,209 + HP15_1901 0.54 -0.0 2,011,211 - HP15_1901 0.54 +0.5 2,011,234 + HP15_1901 0.56 -1.0 2,011,451 - HP15_1901 0.73 -0.6 2,011,509 + HP15_1901 0.77 -0.7 2,011,590 + HP15_1901 0.84 +1.0 2,011,670 + -1.0 2,011,762 + -0.6 2,011,812 + +0.2 2,012,002 - HP15_1902 0.19 +2.2 2,012,164 - HP15_1902 0.41 -1.8 2,012,340 - HP15_1902 0.64 -0.5 2,012,357 - HP15_1902 0.67 +0.5 2,012,360 - HP15_1902 0.67 +2.9 2,012,444 + HP15_1902 0.78 -1.5 2,012,555 - -1.9 2,012,614 + +1.8 2,012,614 + -0.2 2,012,622 - +0.3 2,012,638 + -0.6 2,012,653 - -1.3 2,012,702 + -1.0 2,012,736 - HP15_1903 0.12 -0.6 2,012,738 + HP15_1903 0.12 -0.9 2,012,751 - HP15_1903 0.14 -0.6 2,012,753 + HP15_1903 0.14 -0.8
Or see this region's nucleotide sequence