Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1882 and HP15_1883 are separated by 31 nucleotides HP15_1883 and HP15_1884 are separated by 31 nucleotides HP15_1884 and HP15_1885 are separated by 3 nucleotides HP15_1885 and HP15_1886 are separated by 348 nucleotides
HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433
_1882
HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067
_1883
HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422
_1884
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482
_1886
Position (kb) 1988
1989
1990
1991 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1987.606 kb on - strand, within HP15_1883 at 1988.098 kb on - strand at 1988.136 kb on - strand, within HP15_1884 at 1990.412 kb on - strand at 1990.468 kb on + strand at 1990.981 kb on + strand, within HP15_1886 at 1990.981 kb on + strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.991 kb on + strand, within HP15_1886 at 1991.048 kb on - strand, within HP15_1886 at 1991.185 kb on + strand, within HP15_1886 at 1991.301 kb on - strand, within HP15_1886 at 1991.325 kb on + strand, within HP15_1886 at 1991.331 kb on - strand, within HP15_1886
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,987,606 - HP15_1883 0.23 +1.5 1,988,098 - +0.3 1,988,136 - HP15_1884 0.11 +1.2 1,990,412 - -2.0 1,990,468 + +2.0 1,990,981 + HP15_1886 0.34 -0.9 1,990,981 + HP15_1886 0.34 +3.7 1,990,989 - HP15_1886 0.35 +0.4 1,990,989 - HP15_1886 0.35 +0.5 1,990,989 - HP15_1886 0.35 +1.1 1,990,991 + HP15_1886 0.35 -0.1 1,991,048 - HP15_1886 0.42 -0.9 1,991,185 + HP15_1886 0.61 -0.9 1,991,301 - HP15_1886 0.76 -0.2 1,991,325 + HP15_1886 0.79 +2.5 1,991,331 - HP15_1886 0.80 -0.6
Or see this region's nucleotide sequence