Strain Fitness in Marinobacter adhaerens HP15 around HP15_1830

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1829 and HP15_1830 are separated by 107 nucleotidesHP15_1830 and HP15_1831 are separated by 314 nucleotides HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722 _1829 HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078 _1830 HP15_1831: HP15_1831 - aspartate-semialdehyde dehydrogenase, at 1,930,393 to 1,931,475 _1831 Position (kb) 1926 1927 1928 1929 1930 1931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1925.929 kb on - strand, within HP15_1829at 1926.345 kb on - strand, within HP15_1829at 1926.435 kb on + strand, within HP15_1829at 1926.537 kb on + strand, within HP15_1829at 1926.563 kb on - strand, within HP15_1829at 1926.850 kb on + strandat 1926.857 kb on + strandat 1926.864 kb on + strandat 1926.918 kb on + strandat 1927.182 kb on + strand, within HP15_1830at 1927.215 kb on - strand, within HP15_1830at 1927.242 kb on + strand, within HP15_1830at 1927.333 kb on + strand, within HP15_1830at 1927.341 kb on - strand, within HP15_1830at 1927.483 kb on + strand, within HP15_1830at 1928.028 kb on + strand, within HP15_1830at 1928.121 kb on + strand, within HP15_1830at 1928.282 kb on - strand, within HP15_1830at 1928.288 kb on - strand, within HP15_1830at 1928.341 kb on + strand, within HP15_1830at 1928.561 kb on - strand, within HP15_1830at 1928.685 kb on - strand, within HP15_1830at 1928.700 kb on + strand, within HP15_1830at 1928.869 kb on + strand, within HP15_1830at 1929.072 kb on + strand, within HP15_1830at 1929.272 kb on - strand, within HP15_1830at 1929.346 kb on + strand, within HP15_1830at 1929.365 kb on + strand, within HP15_1830at 1929.510 kb on - strand, within HP15_1830at 1929.572 kb on - strand, within HP15_1830at 1929.645 kb on + strand, within HP15_1830at 1929.645 kb on - strand, within HP15_1830at 1929.645 kb on - strand, within HP15_1830at 1929.770 kb on + strandat 1929.786 kb on - strandat 1930.003 kb on + strandat 1930.003 kb on + strandat 1930.003 kb on + strandat 1930.005 kb on + strandat 1930.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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1,925,929 - HP15_1829 0.13 -1.5
1,926,345 - HP15_1829 0.58 +2.7
1,926,435 + HP15_1829 0.68 +3.2
1,926,537 + HP15_1829 0.80 +0.4
1,926,563 - HP15_1829 0.82 +2.0
1,926,850 + +0.0
1,926,857 + +0.9
1,926,864 + -0.0
1,926,918 + -0.4
1,927,182 + HP15_1830 0.11 +0.0
1,927,215 - HP15_1830 0.12 +2.4
1,927,242 + HP15_1830 0.13 +2.1
1,927,333 + HP15_1830 0.15 -0.8
1,927,341 - HP15_1830 0.16 +1.9
1,927,483 + HP15_1830 0.20 +1.5
1,928,028 + HP15_1830 0.37 +2.2
1,928,121 + HP15_1830 0.40 +0.0
1,928,282 - HP15_1830 0.45 +1.8
1,928,288 - HP15_1830 0.45 +1.4
1,928,341 + HP15_1830 0.47 +0.1
1,928,561 - HP15_1830 0.53 -1.5
1,928,685 - HP15_1830 0.57 -2.4
1,928,700 + HP15_1830 0.58 -0.8
1,928,869 + HP15_1830 0.63 -1.5
1,929,072 + HP15_1830 0.69 -0.5
1,929,272 - HP15_1830 0.75 +1.9
1,929,346 + HP15_1830 0.77 +2.0
1,929,365 + HP15_1830 0.78 -0.4
1,929,510 - HP15_1830 0.82 +1.8
1,929,572 - HP15_1830 0.84 -0.6
1,929,645 + HP15_1830 0.87 -0.6
1,929,645 - HP15_1830 0.87 +1.8
1,929,645 - HP15_1830 0.87 -0.8
1,929,770 + +1.9
1,929,786 - +0.1
1,930,003 + +0.2
1,930,003 + +2.2
1,930,003 + +3.2
1,930,005 + -0.1
1,930,240 + -0.9

Or see this region's nucleotide sequence